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RESEARCH ARTICLE
A genomic analysis of Mycobacterium immunogenum strain CD11_6 and its potential role in the activation of T cells against Mycobacterium tuberculosis
Gurpreet Kaur, Atul Munish Chander, Gurwinder Kaur, Sudeep Kumar Maurya, Sajid Nadeem, Rakesh Kochhar, Sanjay Kumar Bhadada, Javed N. Agrewala and Shanmugam Mayilraj

BMC Microbiology 2019 19:64
Published on: 20 March 2019

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RESEARCH ARTICLE
Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia
J. J. van Aartsen, C. E. Moore, C. M. Parry, P. Turner, N. Phot, S. Mao, K. Suy, T. Davies, A. Giess, A. E. Sheppard, T. E. A. Peto, N. P. J. Day, D. W. Crook, A. S. Walker and N. Stoesser

BMC Microbiology 2019 19:59
Published on: 12 March 2019

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RESEARCH ARTICLE
Comparative gene expression analysis of planktonic Porphyromonas gingivalis ATCC 33277 in the presence of a growing biofilm versus planktonic cells
María C. Sánchez, Patricia Romero-Lastra, Honorato Ribeiro-Vidal, Arancha Llama-Palacios, Elena Figuero, David Herrera and Mariano Sanz

BMC Microbiology 2019 19:58
Published on: 12 March 2019

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RESEARCH ARTICLE
Letrozole treatment of adult female mice results in a similar reproductive phenotype but distinct changes in metabolism and the gut microbiome compared to pubertal mice
Pedro J. Torres, Danalea V. Skarra, Bryan S. Ho, Lillian Sau, Arya R. Anvar, Scott T. Kelley and Varykina G. Thackray

BMC Microbiology 2019 19:57
Published on: 12 March 2019

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RESEARCH ARTICLE
Paeniclostridium sordellii and Clostridioides difficile encode similar and clinically relevant tetracycline resistance loci in diverse genomic locations
Callum J. Vidor, Dieter Bulach, Milena Awad and Dena Lyras

BMC Microbiology 2019 19:53
Published on: 4 March 2019

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RESEARCH ARTICLE
Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue 
Christopher J. Stewart, Roxana Fatemizadeh, Pamela Parsons, Christopher A. Lamb, Deborah A. Shady, Joseph F. Petrosino and Amy B. Hair

BMC Microbiology 2019 19:52
Published on: 4 March 2019

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RESEARCH ARTICLE
Mangrove derived Streptomyces sp. MUM265 as a potential source of antioxidant and anticolon-cancer agents
Loh Teng-Hern Tan, Kok-Gan Chan, Priyia Pusparajah, Wai-Fong Yin, Tahir Mehmood Khan, Learn-Han Lee and Bey-Hing Goh

BMC Microbiology 2019 19:38
Published on: 13 February 2019

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RESEARCH ARTICLE
Lactobacillus mucosae DPC 6426 as a bile-modifying and immunomodulatory microbe
Paul M. Ryan, Ellen H. Stolte, Lis E. E. London, Jerry M. Wells, Sarah L. Long, Susan A. Joyce, Cormac G. M. Gahan, Gerald F. Fitzgerald, R. Paul Ross, Noel M. Caplice and Catherine Stanton

BMC Microbiology 2019 19:33
Published on: 8 February 2019

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RESEARCH ARTICLE
Phylogenetic relationship of Ornithobacterium rhinotracheale isolated from poultry and diverse avian hosts based on 16S rRNA and rpoB gene analyses​​​​​​​
Inês M. B. Veiga, Dörte Lüschow, Stefanie Gutzer, Hafez M. Hafez and Kristin Mühldorfe

BMC Microbiology 2019 19:31
Published on: 6 February 2019

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RESEARCH ARTICLE
NGS-based phylogeny of diphtheria-related pathogenicity factors in different Corynebacterium spp. implies species-specific virulence transmission​​​​​​​
Alexandra Dangel, Anja Berger, Regina Konrad and Andreas Sing

BMC Microbiology 2019 19:28
Published on: 1 February 2019

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RESEARCH ARTICLE
Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France​​​​​​​
Guillaume Geslain, André Birgy, Sandrine Adiba, Mélanie Magnan, Céline Courroux, Corinne Levy, Robert Cohen, Philippe Bidet and Stéphane Bonacorsi

BMC Microbiology 2019 19:17
Published on: 17 January 2019

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RESEARCH ARTICLE
Comparative study of vulva and abdominal skin microbiota of healthy females with high and average BMI​​​​​​​
Rebecca Vongsa, Doug Hoffman, Kristin Shepard and David Koenig

BMC Microbiology 2019 19:16
Published on: 17 January 2019

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RESEARCH ARTICLE
Characterization and complete genome analysis of the surfactin-producing, plant-protecting bacterium Bacillus velezensis 9D-6​​​​​​​
Elliot Nicholas Grady, Jacqueline MacDonald, Margaret T. Ho, Brian Weselowski, Tim McDowell, Ori Solomon, Justin Renaud and Ze-Chun Yuan

BMC Microbiology 2019 19:5
Published on: 8 January 2019

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RESEARCH ARTICLE
Functional analysis of Leifsonia xyli subsp. xyli membrane protein gene Lxx18460 (anti-sigma
Kai Zhu, Min Shao, Dan Zhou,Yong-Xiu Xing, Li-Tao Yang and Yang-Rui Li 

BMC Microbiology 2019 19:2
Published on: 7 January 2019

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RESEARCH ARTICLE
Putrescine biosynthesis and export genes are essential for normal growth of avian pathogenic Escherichia coli
Priscila R. Guerra, Ana Herrero-Fresno, Victor Ladero, Begoña Redruello, Teresa Pires dos Santos, Malene R. Spiegelhauer, Lotte Jelsbak and John Elmerdahl Olsen

BMC Microbiology 2018 18:226
Published on: 27 December 2018

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RESEARCH ARTICLE
Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study​​​​​​​
Martin Steen Mortensen†, Betina Hebbelstrup Jensen†, Jeanne Williams, Asker Daniel Brejnrod, Lee O’Brien Andersen, Dennis Röser, Bente Utoft Andreassen, Andreas Munk Petersen, Christen Rune Stensvold, Søren Johannes Sørensen and Karen Angeliki Krogfelt

BMC Microbiology 2018 18:223
Published on: 22 December 2018

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RESEARCH ARTICLE
Genomic characterization of Listeria monocytogenes isolates reveals that their persistence in a pig slaughterhouse is linked to the presence of benzalkonium chloride resistance genes​​​​​​​Tamazight Cherifi, Catherine Carrillo, Dominic Lambert, Ilhem Miniaï, Sylvain Quessy, Guillaume Larivière-Gauthier, Burton Blais, and Philippe Fravalo

BMC Microbiology 2018 18:220
Published on: 20 December 2018

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RESEARCH ARTICLE
Evaluating the profound effect of gut microbiome on host appetite in pigs
Hui Yang†, Ming Yang†, Shaoming Fang, Xiaochang Huang, Maozhang He, Shanlin Ke, Jun Gao, Jinyuan Wu, Yunyan Zhou, Hao Fu, Congying Chen and Lusheng Huang

BMC Microbiology 2018 18:215
Published on: 14 December 2018

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RESEARCH ARTICLE
Profiling grapevine trunk pathogens in planta: a case for community-targeted DNA metabarcoding
Abraham Morales-Cruz, Rosa Figueroa-Balderas, Jadran F. García, Eric Tran, Philippe E. Rolshausen, Kendra Baumgartner and Dario Cantu

BMC Microbiology 2018 18:214
Published on: 14 December 2018

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RESEARCH ARTICLE
Rumen methanogen and protozoal communities of Tibetan sheep and Gansu Alpine Finewool sheep grazing on the Qinghai–Tibetan Plateau, China
Jinqiang Huang and Yongjuan Li

BMC Microbiology 2018 18:212
Published on: 13 December 2018

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RESEARCH ARTICLE
Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study​​​​​​​
Corrie M. Whisner, Juan Maldonado, Brandon Dente,  Rosa Krajmalnik-Brown and Meg Bruening

BMC Microbiology 2018 18:210
Published on: 12 December 2018

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RESEARCH ARTICLE
Long-term colonization exceeding six years from early infancy of Bifidobacterium longum subsp. longum in human gut​​​​​​​
Kaihei Oki, Takuya Akiyama, Kazunori Matsuda, Agata Gawad, Hiroshi Makino, Eiji Ishikawa, Kenji Oishi, Akira Kushiro and Junji Fujimoto

BMC Microbiology 2018 18:209
Published on: 12 December 2018

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RESEARCH ARTICLE
USA300 Staphylococcus aureus persists on multiple body sites following an infection
Timothy D. Read, Robert A. PetitIII, Zachary Yin, Tuyaa Montgomery, Moira C. McNulty and Michael Z. David

BMC Microbiology 2018 18:206
Published on: 5 December 2018

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RESEARCH ARTICLE
Molecular characterization of Mannheimia haemolytica isolates associated with pneumonic cases of sheep in selected areas of Central Ethiopia​​​​​​​
Abinet Legesse, Takele Abayneh, Gezahegne Mamo, Esayas Gelaye, Liyuwork Tesfaw, Martha Yami and Alebachew Belay

BMC Microbiology 2018 18:205
Published on: 5 December 2018

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RESEARCH ARTICLE
Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages
Giuseppe Gallo, Luana Presta, Elena Perrin, Michele Gallo, Davide Marchetto, Anna Maria Puglia, Renato Fani and Franco Baldi

BMC Microbiology 2018 18:198
Published on: 27 November 2018

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RESEARCH ARTICLE
The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus
Alison Vrbanac, Angelica M. Riestra, Alison Coady, Rob Knight, Victor Nizet and Kathryn A. Patras

BMC Microbiology 2018 18:197
Published on: 26 November 2018

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RESEARCH ARTICLE
Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains
Nitin K. Singh, Daniela Bezdan, Aleksandra Checinska Sielaff, Kevin Wheeler, Christopher E. Mason and Kasthuri Venkateswaran

BMC Microbiology 2018 18:175
Published on: 23 November 2018

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RESEARCH ARTICLE
A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms​​​​​​​
Stefanos Banos, Guillaume Lentendu, Anna Kopf, Tesfaye Wubet, Frank Oliver Glöckner and Marlis Reich

BMC Microbiology 2018 18:190
Published on: 20 November 2018

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RESEARCH ARTICLE
Metagenomics of pasteurized and unpasteurized gouda cheese using targeted 16S rDNA sequencing
Joelle K. Salazar, Christina K. Carstens, Padmini Ramachandran, Arlette G. Shazer, Sartaj S. Narula, Elizabeth Reed, Andrea Ottesen and Kristin M. Schill

BMC Microbiology 2018 18:189
Published on: 19 November 2018

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RESEARCH ARTICLE
Taxonomic classification for microbiome analysis, which correlates well with the metabolite milieu of the gut
Yoshihisa Wakita, Yumi Shimomura, Yusuke Kitada, Hiroyuki Yamamoto, Yoshiaki Ohashi and Mitsuharu Matsumoto

BMC Microbiology 2018 18:188
Published on: 16 November 2018

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RESEARCH ARTICLE
Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial
Erica L. Plummer, Dieter M. Bulach, Gerald L. Murray, Susan E. Jacobs, Sepehr N. Tabrizi, Suzanne M. Garland and for the ProPrems Study Group

BMC Microbiology 2018 18:184
Published on: 13 November 2018

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RESEARCH ARTICLE
Characterization of Streptococcus pluranimalium from a cattle with mastitis by whole genome sequencing and functional validation
Yushan Pan, Haoran An, Tong Fu, Shiyu Zhao, Chengwang Zhang, Genhui Xiao, Jingren Zhang, Xinfang Zhao and Gongzheng Hu

BMC Microbiology 2018 18:182
Published on: 12 November 2018

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RESEARCH ARTICLE
Correlating enzyme annotations with a large set of microbial growth temperatures reveals metabolic adaptations to growth at diverse temperatures​​​​​​​
Martin K. M. Engqvist

BMC Microbiology 2018 18:177
Published on: 6 November 2018

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RESEARCH ARTICLE
Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence​​​​​​​
Dai Zhang, Jia-Yu He, Parham Haddadi, Jie-Hua ZhuEmail, Zhi-Hui YangEmail and Lisong Ma

BMC Microbiology 2018 18:176
Published on: 6 November 2018

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RESEARCH ARTICLE
Bradyrhizobium diazoefficiens USDA110 PhaR functions for pleiotropic regulation of cellular processes besides PHB accumulation​​​​​
Shogo Nishihata, Takahiko Kondo, Kosei Tanaka, Shu Ishikawa, Shinji Takenaka, Choong-Min Kang and Ken-ichi Yoshida

BMC Microbiology 2018 18:156
Published on: 24 October 2018

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RESEARCH ARTICLE
In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans​​​​​​​
Lars Langhanki, Petya Berger, Janina Treffon, Francesco Catania, Barbara C. Kahl and Alexander Mellmann

BMC Microbiology 2018 18:152
Published on: 22 October 2018

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RESEARCH ARTICLE
Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations​​​​​​​
Ajoy Roy, Pinaki Sar, Jayeeta Sarkar, Avishek Dutta, Poulomi Sarkar, Abhishek Gupta, Balaram Mohapatra, Siddhartha Pal and Sufia K Kazy

BMC Microbiology 2018 18:151
Published on: 22 October 2018

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RESEARCH ARTICLE
Insights into the impact of flhF inactivation on Campylobacter jejuni colonization of chick and mice gut
Fangzhe Ren, Xiaofei Li, Haiyan Tang, Qidong Jiang, Xi Yun, Lin Fang, Pingyu Huang, Yuanyue Tang, Qiuchun Li, Jinlin Huang and Xin-an Jiao

BMC Microbiology 2018 18:149
Published on: 22 October 2018

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RESEARCH ARTICLE
Dickeya zeae strains isolated from rice, banana and clivia rot plants show great virulence differentials​​​​​​
Ming Hu, Jieling Li, Ruiting Chen, Wenjun Li, Luwen Feng, Lei Shi, Yang Xue, Xiaoyin Feng, Lianhui Zhang and Jianuan Zhou

BMC Microbiology 2018 18:136
Published on: 18 October 2018

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RESEARCH ARTICLE
Mass spectrometry-based identification and whole-genome characterisation of the first pteropine orthoreovirus isolated from monkey faeces in Thailand​​​​​​​
Nathamon Kosoltanapiwat, Onrapak Reamtong, Tamaki Okabayashi, Sumate Ampawong, Amporn Rungruengkitkun, Tipparat Thiangtrongjit, Narin Thippornchai, Pornsawan Leaungwutiwong, Aongart Mahittikorn, Hirotake Mori, Thanada Yoohanngoa and Prechaya Yamwong

BMC Microbiology 2018 18:135
Published on: 17 October 2018

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RESEARCH ARTICLE
Temperature-controlled thermophilic bacterial communities in hot springs of western Sichuan, China​​​​​​​
Jie Tang, Yuanmei Liang, Dong Jiang, Liheng Li, Yifan Luo, Md. Mahfuzur R. Shah and Maurycy Daroch

BMC Microbiology 2018 18:134
Published on: 17 October 2018

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RESEARCH ARTICLE
Biocontrol traits of Bacillus licheniformis GL174,a culturable endophyte of Vitis vinifera cv. Glera​​​​​​​Sebastiano Nigris, Enrico Baldan, Alessandra Tondello, Filippo Zanella, Nicola Vitulo, Gabriella Favaro, Valerio Guidolin, Nicola Bordin, Andrea Telatin, Elisabetta Barizza, Stefania Marcato, Michela Zottini, Andrea Squartini, Giorgio Valle and Barbara Baldan

BMC Microbiology 2018 18:133
Published on: 16 October 2018

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RESEARCH ARTICLE
The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala​​​​​​​
Xiaoyun Wang, Qiao Gao, Wanqiang Wang, Xiaoping Wang, Chaoliang Lei and Fen Zhu

BMC Microbiology 2018 18:131
Published on: 11 October 2018

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RESEARCH ARTICLE
Escovopsioides as a fungal antagonist of the fungus cultivated by leafcutter ants​​​​
Julio Flavio Osti and Andre Rodrigues

BMC Microbiology 2018 18:130
Published on: 10 October 2018

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RESEARCH ARTICLE
The palatine tonsil bacteriome, but not the mycobiome, is altered in HIV infection
Yuto Fukui, Kotaro Aoki, Yoshikazu Ishii and Kazuhiro Tateda

BMC Microbiology 2018 18:127
Published on: 5 October 2018

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RESEARCH ARTICLE
Estimating bacteria diversity in different organs of nine species of mosquito by next generation sequencing
M V Mancini, C Damiani, A Accoti, M Tallarita, E Nunzi, A Cappelli, J Bozic, R Catanzani, P Rossi, M Valzano, A Serrao, I Ricci, R Spaccapelo,  G Favia

BMC Microbiology 2018 18:126
Published on: 4 October 2018

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RESEARCH ARTICLE
Air and waterborne microbiome of a pharmaceutical plant provide insights on spatiotemporal variations and community resilience after disturbance
Filippo Pacchioni, Alfonso Esposito, Elisabetta Giacobazzi, Clotilde Bettua, Paolo Struffi and Olivier Jousson

BMC Microbiology 2018 18:124
Published on: 3 October 2018

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RESEARCH ARTICLE
A metagenome-wide association study of gut microbiota in asthma in UK adults
Qi Wang, Fei Li, Bishan Liang, Yuhu Liang, Sijie Chen, Xiaodong Mo, Yanmei Ju, Hui Zhao, Huijue Jia, Timothy D. Spector, Hailiang Xie and Ruijin Guo

BMC Microbiology 2018 18:114
Published on: 12 September 2018

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RESEARCH ARTICLE
Genotyping and phylogenetic placement of Bacillus anthracis isolates from Finland, a country with rare anthrax cases
Taru Lienemann, Wolfgang Beyer, Kirsti Pelkola, Heidi Rossow, Alexandra Rehn, Markus Antwerpen and Gregor Grass

BMC Microbiology 2018 18:102
Published on: 3 September 2018

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RESEARCH ARTICLE
A decay effect of the growth rate associated with genome reduction in Escherichia coli
Kouhei Tsuchiya, Yang-Yang Cao, Masaomi Kurokawa, Kazuha Ashino, Tetsuya Yomo and Bei-Wen Ying

BMC Microbiology 2018 18:101
Published on: 3 September 2018

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RESEARCH ARTICLE
The variation profile of intestinal microbiota in blunt snout bream (Megalobrama amblycephala) during feeding habit transition 
Jin Wei, Xianwu Guo, Han Liu, Yuanyuan Chen and Weimin Wang

BMC Microbiology 2018 18:99
Published on: 3 September 2018

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