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RESEARCH ARTICLE
Diet, physical activity and screen time but not body mass index are associated with the gut microbiome of a diverse cohort of college students living in university housing: a cross-sectional study​​​​​​​
Corrie M. Whisner, Juan Maldonado, Brandon Dente,  Rosa Krajmalnik-Brown and Meg Bruening

BMC Microbiology 2018 18:210
Published on: 12 December 2018

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RESEARCH ARTICLE
Long-term colonization exceeding six years from early infancy of Bifidobacterium longum subsp. longum in human gut​​​​​​​
Kaihei Oki, Takuya Akiyama, Kazunori Matsuda, Agata Gawad, Hiroshi Makino, Eiji Ishikawa, Kenji Oishi, Akira Kushiro and Junji Fujimoto

BMC Microbiology 2018 18:209
Published on: 12 December 2018

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RESEARCH ARTICLE
Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages
Giuseppe Gallo, Luana Presta, Elena Perrin, Michele Gallo, Davide Marchetto, Anna Maria Puglia, Renato Fani and Franco Baldi

BMC Microbiology 2018 18:198
Published on: 27 November 2018

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RESEARCH ARTICLE
The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus
Alison Vrbanac, Angelica M. Riestra, Alison Coady, Rob Knight, Victor Nizet and Kathryn A. Patras

BMC Microbiology 2018 18:197
Published on: 26 November 2018

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RESEARCH ARTICLE
Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains
Nitin K. Singh, Daniela Bezdan, Aleksandra Checinska Sielaff, Kevin Wheeler, Christopher E. Mason and Kasthuri Venkateswaran

BMC Microbiology 2018 18:175
Published on: 23 November 2018

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RESEARCH ARTICLE
A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms​​​​​​​
Stefanos Banos, Guillaume Lentendu, Anna Kopf, Tesfaye Wubet, Frank Oliver Glöckner and Marlis Reich

BMC Microbiology 2018 18:190
Published on: 20 November 2018

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RESEARCH ARTICLE
Metagenomics of pasteurized and unpasteurized gouda cheese using targeted 16S rDNA sequencing
Joelle K. Salazar, Christina K. Carstens, Padmini Ramachandran, Arlette G. Shazer, Sartaj S. Narula, Elizabeth Reed, Andrea Ottesen and Kristin M. Schill

BMC Microbiology 2018 18:189
Published on: 19 November 2018

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RESEARCH ARTICLE
Taxonomic classification for microbiome analysis, which correlates well with the metabolite milieu of the gut
Yoshihisa Wakita, Yumi Shimomura, Yusuke Kitada, Hiroyuki Yamamoto, Yoshiaki Ohashi and Mitsuharu Matsumoto

BMC Microbiology 2018 18:188
Published on: 16 November 2018

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RESEARCH ARTICLE
Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial
Erica L. Plummer, Dieter M. Bulach, Gerald L. Murray, Susan E. Jacobs, Sepehr N. Tabrizi, Suzanne M. Garland and for the ProPrems Study Group

BMC Microbiology 2018 18:184
Published on: 13 November 2018

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RESEARCH ARTICLE
Characterization of Streptococcus pluranimalium from a cattle with mastitis by whole genome sequencing and functional validation
Yushan Pan, Haoran An, Tong Fu, Shiyu Zhao, Chengwang Zhang, Genhui Xiao, Jingren Zhang, Xinfang Zhao and Gongzheng Hu

BMC Microbiology 2018 18:182
Published on: 12 November 2018

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RESEARCH ARTICLE
Correlating enzyme annotations with a large set of microbial growth temperatures reveals metabolic adaptations to growth at diverse temperatures​​​​​​​
Martin K. M. Engqvist

BMC Microbiology 2018 18:177
Published on: 6 November 2018

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RESEARCH ARTICLE
Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence​​​​​​​
Dai Zhang, Jia-Yu He, Parham Haddadi, Jie-Hua ZhuEmail, Zhi-Hui YangEmail and Lisong Ma

BMC Microbiology 2018 18:176
Published on: 6 November 2018

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RESEARCH ARTICLE
Bradyrhizobium diazoefficiens USDA110 PhaR functions for pleiotropic regulation of cellular processes besides PHB accumulation​​​​​
Shogo Nishihata, Takahiko Kondo, Kosei Tanaka, Shu Ishikawa, Shinji Takenaka, Choong-Min Kang and Ken-ichi Yoshida

BMC Microbiology 2018 18:156
Published on: 24 October 2018

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RESEARCH ARTICLE
In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans​​​​​​​
Lars Langhanki, Petya Berger, Janina Treffon, Francesco Catania, Barbara C. Kahl and Alexander Mellmann

BMC Microbiology 2018 18:152
Published on: 22 October 2018

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RESEARCH ARTICLE
Petroleum hydrocarbon rich oil refinery sludge of North-East India harbours anaerobic, fermentative, sulfate-reducing, syntrophic and methanogenic microbial populations​​​​​​​
Ajoy Roy, Pinaki Sar, Jayeeta Sarkar, Avishek Dutta, Poulomi Sarkar, Abhishek Gupta, Balaram Mohapatra, Siddhartha Pal and Sufia K Kazy

BMC Microbiology 2018 18:151
Published on: 22 October 2018

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RESEARCH ARTICLE
Insights into the impact of flhF inactivation on Campylobacter jejuni colonization of chick and mice gut
Fangzhe Ren, Xiaofei Li, Haiyan Tang, Qidong Jiang, Xi Yun, Lin Fang, Pingyu Huang, Yuanyue Tang, Qiuchun Li, Jinlin Huang and Xin-an Jiao

BMC Microbiology 2018 18:149
Published on: 22 October 2018

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RESEARCH ARTICLE
Dickeya zeae strains isolated from rice, banana and clivia rot plants show great virulence differentials​​​​​​
Ming Hu, Jieling Li, Ruiting Chen, Wenjun Li, Luwen Feng, Lei Shi, Yang Xue, Xiaoyin Feng, Lianhui Zhang and Jianuan Zhou

BMC Microbiology 2018 18:136
Published on: 18 October 2018

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RESEARCH ARTICLE
Mass spectrometry-based identification and whole-genome characterisation of the first pteropine orthoreovirus isolated from monkey faeces in Thailand​​​​​​​
Nathamon Kosoltanapiwat, Onrapak Reamtong, Tamaki Okabayashi, Sumate Ampawong, Amporn Rungruengkitkun, Tipparat Thiangtrongjit, Narin Thippornchai, Pornsawan Leaungwutiwong, Aongart Mahittikorn, Hirotake Mori, Thanada Yoohanngoa and Prechaya Yamwong

BMC Microbiology 2018 18:135
Published on: 17 October 2018

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RESEARCH ARTICLE
Temperature-controlled thermophilic bacterial communities in hot springs of western Sichuan, China​​​​​​​
Jie Tang, Yuanmei Liang, Dong Jiang, Liheng Li, Yifan Luo, Md. Mahfuzur R. Shah and Maurycy Daroch

BMC Microbiology 2018 18:134
Published on: 17 October 2018

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RESEARCH ARTICLE
Biocontrol traits of Bacillus licheniformis GL174,a culturable endophyte of Vitis vinifera cv. Glera​​​​​​​Sebastiano Nigris, Enrico Baldan, Alessandra Tondello, Filippo Zanella, Nicola Vitulo, Gabriella Favaro, Valerio Guidolin, Nicola Bordin, Andrea Telatin, Elisabetta Barizza, Stefania Marcato, Michela Zottini, Andrea Squartini, Giorgio Valle and Barbara Baldan

BMC Microbiology 2018 18:133
Published on: 16 October 2018

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RESEARCH ARTICLE
The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala​​​​​​​
Xiaoyun Wang, Qiao Gao, Wanqiang Wang, Xiaoping Wang, Chaoliang Lei and Fen Zhu

BMC Microbiology 2018 18:131
Published on: 11 October 2018

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RESEARCH ARTICLE
Escovopsioides as a fungal antagonist of the fungus cultivated by leafcutter ants​​​​
Julio Flavio Osti and Andre Rodrigues

BMC Microbiology 2018 18:130
Published on: 10 October 2018

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RESEARCH ARTICLE
The palatine tonsil bacteriome, but not the mycobiome, is altered in HIV infection
Yuto Fukui, Kotaro Aoki, Yoshikazu Ishii and Kazuhiro Tateda

BMC Microbiology 2018 18:127
Published on: 5 October 2018

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RESEARCH ARTICLE
Estimating bacteria diversity in different organs of nine species of mosquito by next generation sequencing
M V Mancini, C Damiani, A Accoti, M Tallarita, E Nunzi, A Cappelli, J Bozic, R Catanzani, P Rossi, M Valzano, A Serrao, I Ricci, R Spaccapelo,  G Favia

BMC Microbiology 2018 18:126
Published on: 4 October 2018

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RESEARCH ARTICLE
Air and waterborne microbiome of a pharmaceutical plant provide insights on spatiotemporal variations and community resilience after disturbance
Filippo Pacchioni, Alfonso Esposito, Elisabetta Giacobazzi, Clotilde Bettua, Paolo Struffi and Olivier Jousson

BMC Microbiology 2018 18:124
Published on: 3 October 2018

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RESEARCH ARTICLE
A metagenome-wide association study of gut microbiota in asthma in UK adults
Qi Wang, Fei Li, Bishan Liang, Yuhu Liang, Sijie Chen, Xiaodong Mo, Yanmei Ju, Hui Zhao, Huijue Jia, Timothy D. Spector, Hailiang Xie and Ruijin Guo

BMC Microbiology 2018 18:114
Published on: 12 September 2018

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RESEARCH ARTICLE
Genotyping and phylogenetic placement of Bacillus anthracis isolates from Finland, a country with rare anthrax cases
Taru Lienemann, Wolfgang Beyer, Kirsti Pelkola, Heidi Rossow, Alexandra Rehn, Markus Antwerpen and Gregor Grass

BMC Microbiology 2018 18:102
Published on: 3 September 2018

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RESEARCH ARTICLE
A decay effect of the growth rate associated with genome reduction in Escherichia coli
Kouhei Tsuchiya, Yang-Yang Cao, Masaomi Kurokawa, Kazuha Ashino, Tetsuya Yomo and Bei-Wen Ying

BMC Microbiology 2018 18:101
Published on: 3 September 2018

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RESEARCH ARTICLE
The variation profile of intestinal microbiota in blunt snout bream (Megalobrama amblycephala) during feeding habit transition 
Jin Wei, Xianwu Guo, Han Liu, Yuanyuan Chen and Weimin Wang

BMC Microbiology 2018 18:99
Published on: 3 September 2018

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