Martin RM, Bachman MA. Colonization, Infection, and the Accessory Genome of Klebsiella pneumoniae. Front Cell Infect Microbiol. 2018;8:4.
Yu Z, Li S, Li Y, Jiang Z, Zhou J, An Q. Complete genome sequence of N2-fixing model strain Klebsiella sp. nov. M5al, which produces plant cell wall-degrading enzymes and siderophores. Biotechnol reports. 2018;17:6–9.
Qamar N, Rehman Y, Hasnain S. Arsenic-resistant and plant growth-promoting Firmicutes and γ-Proteobacteria species from industrially polluted irrigation water and corresponding cropland. J Appl Microbiol. 2017;123:748–58.
Sheik CS, Mitchell TW, Rizvi FZ, Rehman Y, Faisal M, Hasnain S, McInerney MJ, Krumholz LR. Exposure of soil microbial communities to chromium and arsenic alters their diversity and structure. PLoS One. 2012;7(6):e40059.
Hogenauer C, Langner C, Beubler E, Lippe IT, Schicho R, Gorkiewicz G, et al. Klebsiella oxytoca as a causative organism of antibiotic-associated hemorrhagic colitis. N Engl J Med. 2006;355:2418–26.
Pavlova AS, Leontieva MR, Smirnova TA, Kolomeitseva GL, Netrusov AI, Tsavkelova EA. Colonization strategy of the endophytic plant growth-promoting strains of Pseudomonas fluorescens and Klebsiella oxytoca on the seeds, seedlings and roots of the epiphytic orchid, Dendrobium nobile Lindl. J Appl Microbiol. 2017;123:217–32.
Cho S, Kim T, Woo HM, Kim Y, Lee J, Um Y. High production of 2,3-butanediol from biodiesel-derived crude glycerol by metabolically engineered Klebsiella oxytoca M1. Biotechnol Biofuels. 2015;8:146.
Baldi F, Olson GJ. Effects of cinnabar on pyrite oxidation by Thiobacillus ferrooxidans and cinnabar mobilization by a mercury-resistant strain. Appl Environ Microbiol. 1987;53:772–6.
Baldi F, Bralia A, Riccobono F, Sabatini G. Bioleaching of cobalt and zinc from pyrite ore in relation to calcitic gangue content. World J Microbiol Biotechnol. 1991;7:298–308.
Baldi F, Marchetto D, Battistel D, Daniele S, Faleri C, De Castro C, et al. Iron-binding characterization and polysaccharide production by Klebsiella oxytoca strain isolated from mine acid drainage. J Appl Microbiol. 2009;107:1241–50.
Leone S, De Castro C, Parrilli M, Baldi F, Lanzetta R. Structure of the iron-binding exopolysaccharide produced anaerobically by the gram-negative bacterium Klebsiella oxytoca BAS-10. European J Org Chem. 2007;2007:5183–9.
Baldi F, Minacci A, Pepi M, Scozzafava A. Gel sequestration of heavy metals by Klebsiella oxytoca isolated from iron mat. FEMS Microbiol Ecol. 2001;36:169–74.
Casentini B, Rossetti S, Gallo M, Baldi F. Potentialities of biogenerated iron hydroxides nanoparticles in arsenic water treatment. Conference Proceedings 6th European Bioremediation Conference, Chania, Crete, Greece. 2015.
Baldi F, Gallo M, Daniele S, Battistel D, Faleri C, Kodre A, et al. An extracellular polymeric substance quickly chelates mercury(II) with N-heterocyclic groups. Chemosphere. 2017;176:296–304.
Baldi F, Marchetto D, Zanchettin D, Sartorato E, Paganelli S, Piccolo O. A bio-generated Fe(iii)-binding exopolysaccharide used as new catalyst for phenol hydroxylation. Green Chem. 2010;12:1405–9.
Arčon I, Piccolo O, Paganelli S, Baldi F. XAS analysis of a nanostructured iron polysaccharide produced anaerobically by a strain of Klebsiella oxytoca. Biometals. 2012;25:875–81.
Paganelli S, Piccolo O, Baldi F, Gallo M, Tassini R, Rancan M, et al. A new biogenerated Rh-based catalyst for aqueous biphasic hydroformylation. Catal Commun. 2015;71:32–6.
Paganelli S, Tassini R, La Sorella G, Piccolo O, Baldi F, Rathod VD. Aqueous biphasic treatment of some nitrocompounds with hydrogen in the presence of a biogenerated Pd-polysaccharide. New Biotechnol. 2015;32:313–7.
Paganelli S, Piccolo O, Baldi F, Tassini R, Gallo M, La Sorella G. Aqueous biphasic hydrogenations catalyzed by new biogenerated Pd-polysaccharide species. Appl Catal A Gen. 2013;451:144–52.
Arčon I, Paganelli S, Piccolo O, Gallo M, Vogel-Mikuš K, Baldi F. XAS analysis of iron and palladium bonded to a polysaccharide produced anaerobically by a strain of Klebsiella oxytoca. J Synchrotron Radiat. 2015;22:1215–26.
Baldi F, Gallo M, Paganelli S, Tassini R, Sperni L, Piccolo O, et al. Hydrodechlorination of aroclor 1260 in aqueous two-phase mixture catalyzed by biogenerated bimetallic catalysts. Int Res J Pure Appl Chem. 2016;11:1.
Baldi F, Daniele S, Gallo M, Paganelli S, Battistel D, Piccolo O, et al. Polysaccharide-based silver nanoparticles synthesized by Klebsiella oxytoca DSM 29614 cause DNA fragmentation in E. coli cells. BioMetals. 2016;29:321–31.
Battistel D, Baldi F, Gallo M, Faleri C, Daniele S. Characterisation of biosynthesised silver nanoparticles by scanning electrochemical microscopy (SECM) and voltammetry. Talanta. 2015;132:294–300.
Buttacavoli M, Albanese NN, Di Cara G, Alduina R, Faleri C, Gallo M, et al. Anticancer activity of biogenerated silver nanoparticles: an integrated proteomic investigation. Oncotarget. 2018;9.
Picceri GG, Leonardi P, Iotti M, Gallo M, Baldi F, Zambonelli A, et al. Bacteria-produced ferric exopolysaccharide nanoparticles as iron delivery system for truffles (Tuber borchii). Appl Microbiol Biotechnol. 2018;102:1429–41.
Gallo G, Baldi F, Renzone G, Gallo M, Cordaro A, Scaloni A, et al. Adaptative biochemical pathways and regulatory networks in Klebsiella oxytoca BAS-10 producing a biotechnologically relevant exopolysaccharide during Fe(III)-citrate fermentation. Microb Cell Factories. 2012;11:152.
Baldi F, Marchetto D, Paganelli S, Piccolo O. Bio-generated metal binding polysaccharides as catalysts for synthetic applications and organic pollutant transformations. New Biotechnol. 2011;29:74–8.
Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976;72:248–54.
Perrin E, Fondi M, Maida I, Mengoni A, Chiellini C, Mocali S, et al. Genomes analysis and bacteria identification: the use of overlapping genes as molecular markers. J Microbiol Methods. 2015;117:108–12.
Presta L, Bosi E, Fondi M, Maida I, Perrin E, Miceli E, et al. Phenotypic and genomic characterization of the antimicrobial producer Rheinheimera sp. EpRS3 isolated from the medicinal plant Echinacea purpurea: insights into its biotechnological relevance. Res Microbiol. 2017;168:293–305.
Cox MP, Peterson DA, Biggs PJ. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics. 2010;11:485.
Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJM, Birol I. ABySS: a parallel assembler for short read sequence data. Genome Res. 2009;19:1117–23.
Bosi E, Donati B, Galardini M, Brunetti S, Sagot M-F, Lio P, et al. MeDuSa: a multi-draft based scaffolder. Bioinformatics. 2015;31:2443–51.
Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MTG, et al. Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics. 2015;31:3691–3.
Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, Takano E, et al. antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res. 2013;41:W204–W212.
Pal C, Bengtsson-Palme J, Rensing C, Kristiansson E, Larsson DGJ. BacMet: antibacterial biocide and metal resistance genes database. Nucleic Acids Res. 2014;42:D737–43.
Travers M, Paley SM, Shrager J, Holland TA, Karp PD. Groups: knowledge spreadsheets for symbolic biocomputing. Database. 2013;2013:bat061.
DuBois M, Gilles KA, Hamilton JK, Rebers PA, Smith F. Colorimetric method for determination of sugars and related substances. Anal Chem. 1956;28:350–6.
Battistel D, Baldi F, Marchetto D, Gallo M, Daniele S. A rapid electrochemical procedure for the detection of hg(0) produced by mercuric-reductase: application for monitoring hg-resistant bacteria activity. Environ Sci Technol. 2012;46:10675–81.
Hoppe HG. Significance of exoenzymatic activities in the ecology of brackish water: measurements by means of methylumbelliferyl-substrates. Mar Ecol Prog Ser. 1983;11:299–308.
Tatusov RL, Galperin MY, Natale DA, Koonin EV. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 2000;28:33–6.
Dimroth P, Jockel P, Schmid M. Coupling mechanism of the oxaloacetate decarboxylase Na(+) pump. Biochim Biophys Acta. 2001;1505:1–14.
Shi L, Squier TC, Zachara JM, Fredrickson JK. Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Mol Microbiol. 2007;65:12–20.
Lovley DR, Holmes D, Nevin KP. Dissimilatory Fe(III) and Mn(IV) reduction. Adv Microb Physiol. 2004;49:219–86.
Schroder I, Johnson E, de Vries S. Microbial ferric iron reductases. FEMS Microbiol Rev. 2003;27:427–47.
Reyes-Ramirez F, Dobbin P, Sawers G, Richardson DJ. Characterization of transcriptional regulation of Shewanella frigidimarina Fe(III)-induced flavocytochrome c reveals a novel iron-responsive gene regulation system. J Bacteriol. 2003;185:4564–71.
Braun V. Iron uptake by Escherichia coli. Front Biosci. 2003;8:s1409–21.
Fontecave M, Covès J, Pierre J-L. Ferric reductases or flavin reductases? Biometals. 1994;7:3–8.
Han AW, Sandy M, Fishman B, Trindade-Silva AE, Soares CAG, Distel DL, et al. Turnerbactin, a novel triscatecholate siderophore from the shipworm endosymbiont Teredinibacter turnerae T7901. PLoS One. 2013;8:e76151.
Santos-Beneit F. The pho regulon: a huge regulatory network in bacteria. Front Microbiol. 2015;6:402.
Holt KE, Wertheim H, Zadoks RN, Baker S, Whitehouse CA, Dance D, et al. Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. Proc Natl Acad Sci U S A. 2015;112:E3574–81.
Podschun R, Ullmann U. Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors. Clin Microbiol Rev. 1998;11:589–603.
Bagley ST. Habitat association of Klebsiella species. Infect Control. 1985;6:52–8.
Gupta P, Diwan B. Bacterial exopolysaccharide mediated heavy metal removal: a review on biosynthesis, mechanism and remediation strategies. Biotechnol Rep. 2017;13:58–71.
Dietl A-M, Amich J, Leal S, Beckmann N, Binder U, Beilhack A, et al. Histidine biosynthesis plays a crucial role in metal homeostasis and virulence of Aspergillus fumigatus. Virulence. 2016;7:465–76.
Cheng T, Xia W, Wang P, Huang F, Wang J, Sun H. Histidine-rich proteins in prokaryotes: metal homeostasis and environmental habitat-related occurrence. Metallomics. 2013;5:1423–9.
Haydon MJ, Cobbett CS. Transporters of ligands for essential metal ions in plants. New Phytol. 2007;174:499–506.
Coombs JM, Barkay T. New findings on evolution of metal homeostasis genes: evidence from comparative genome analysis of bacteria and archaea. Appl Environ Microbiol. 2005;71:7083–91.
Krämer U, Cotter-Howells JD, Charnock JM, Baker AJM, Smith JAC. Free histidine as a metal chelator in plants that accumulate nickel. Nature. 1996;379:635.
Schütze E, Weist A, Klose M, Wach T, Schumann M, Nietzsche S, et al. Taking nature into lab: biomineralization by heavy metal-resistant streptomycetes in soil. Biogeosciences. 2013;10:3605–14.
Yung MC, Jiao Y. Biomineralization of uranium by PhoY phosphatase activity aids cell survival in Caulobacter crescentus. Appl Environ Microbiol. 2014;80:4795–804.
Montgomery DM, Dean AC, Wiffen P, Macaskie LE. Phosphatase production and activity in Citrobacter freundii and a naturally occurring, heavy-metal-accumulating Citrobacter sp. Microbiology. 1995;141(Pt 1):2433–41.
Doyle JD, Parsons SA. Struvite formation, control and recovery. Water Res. 2002;36:3925–40.
Allan VJM, Callow ME, Macaskie LE, Paterson-Beedle M. Effect of nutrient limitation on biofilm formation and phosphatase activity of a Citrobacter sp. Microbiology. 2002;148:277–88.
van de Weerd R, Boot M, Maaskant J, Sparrius M, Verboom T, van Leeuwen LM, et al. Inorganic phosphate limitation modulates capsular polysaccharide composition in Mycobacteria. J Biol Chem. 2016;291:11787–99.