Aires T, Moalic Y, Serrao EA, Arnaud-Haond S. Hologenome theory supported by cooccurrence networks of species-specific bacterial communities in siphonous algae (Caulerpa). FEMS Microbiol Ecol. 2015;91(7):409–17.
Article
CAS
Google Scholar
Aires T, Serrão EA, Kendrick G, Duarte CM, Arnaud-Haond S. Invasion is a community affair: clandestine followers in the bacterial community associated to green algae, Caulerpa racemosa, track the invasion source. PLoS One. 2013;8:e68429.
Article
CAS
PubMed
PubMed Central
Google Scholar
Armstrong E, Yan L, Boyd KG, Wright PC, Burgess JG. The symbiotic role of marine microbes on living surfaces. Hydrobiologia. 2001;461:37–40.
Article
Google Scholar
Arnold AE, Mejia LC, Kyllo D, Rojas EI, Maynard Z, Robbins N, Herre EA. Fungal endophytes limit pathogen damage in a tropical tree. Proc Natl Acad Sci U S A. 2003;100(26):15649–54.
Article
CAS
PubMed
PubMed Central
Google Scholar
Aßhauer KP, Wemheuer B, Daniel R, Meinicke P. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data. Bioinformatics. 2015;31(17):2882–4.
Article
CAS
PubMed
PubMed Central
Google Scholar
Barott KL, Rodriguez-Brito B, Janouškovec J, Marhaver KL, Smith JE, Keeling P, Rohwer FL. Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis. Environ Microbiol. 2011;13(5):1192–204.
Article
CAS
PubMed
Google Scholar
Bengtsson MM, Øvreås L. Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea. BMC Microbiol. 2010;10:261.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bennett JA, Maherali H, Reinhart KO, Lekberg Y, Hart MM, Klironomos J. Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics. Science. 2017;355(6321):181–4.
Article
CAS
PubMed
Google Scholar
Bertrand EM, McCrow JP, Moustafa A, Zheng H, McQuaid JB, Delmont TO, Post AF, Sipler RE, Spackeen JL, Xu K, Bronk DA, Hutchins DA, Allen AE. Phytoplankton–bacterial interactions mediate micronutrient colimitation at the coastal Antarctic Sea ice edge. Proc Natl Acad Sci U S A. 2015;112:9938–43.
Article
CAS
PubMed
PubMed Central
Google Scholar
Biebl H, Pukall R, Lünsdorf H, Schulz S, Tindall BJ AM, Wagner-Döbler I. Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal for reclassification of Stappia aggregate as Labrenzia aggregata comb. nov., of Stappia marina as Labrenzia marina comb. nov. and of Stappia alba as Labrenzia alba comb. nov., and emended descriptions of the genera Pannonibacter, Stappiaand and Roseibium, and of the species Roseibium denhamense and Roseibium hamelinense. International Journal of Systematic and Evolutionary Microbiology. 2007;57:1095–107.
Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods. 2013;10(1):57–9.
Article
CAS
PubMed
Google Scholar
Bondoso J, Balagué V, Gasol JM, Lage OM. Community composition of the Planctomycetes associated with different macroalgae. FEMS Microbiol Ecol. 2014;88(3):445–56.
Article
CAS
PubMed
Google Scholar
Burgess JG, Boyd KG, Armstrong E, Jiang Z, Yan L, Berggren M, May U, Pisacane T, Granmo A, Adams DR. The development of a marine natural product-based antifouling paint. Biofouling. 2003;19:197–205.
Article
CAS
PubMed
Google Scholar
Burgess JG, Jordan EM, Bregu M, Mearns-Spragg A, Boyd KG. Microbial antagonism: a neglected avenue of natural products research. J Biotechnol. 1999;35:27–32.
Article
Google Scholar
Burke C, Steinberg P, Rusch D, Kjelleberg S, Thomas T. Bacterial community assembly based on functional genes rather than species. Proc Natl Acad Sci U S A. 2011a;108(34):14288–93.
Article
PubMed
PubMed Central
Google Scholar
Burke C, Thomas T, Lewis M, Steinberg P, Kjelleberg S. Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis. The ISME Journal. 2011b;5:590–600.
Article
CAS
PubMed
Google Scholar
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–6.
Article
CAS
PubMed
PubMed Central
Google Scholar
Coppejans E, Beeckman T. Caulerpa (Chlorophyta, Caulerpales) from the Kenyan coast. Nova Hedwigia. 1990;50:111–25.
Article
Google Scholar
Cude WN, Mooney J, Tavanaei AA, Hadden MK, Frank AM, Gulvik CA, May AL, Buchan A. Production of the antimicrobial secondary metabolite indigoidine contributes to competitive surface colonization by the marine Roseobacter Phaeobacter sp. strain Y4I. Appl Environ Microbiol. 2012;78(14):4771–80.
Article
CAS
PubMed
PubMed Central
Google Scholar
de Mesquita MMF, Crapez MAC, Teixeira VL, Cavalcanti DN. Potential interactions bacteria-brown algae. J Appl Phycol. 2019;31(2):867–83.
Article
CAS
Google Scholar
Debbab A, Aly AH, Lin WH, Proksch P. Bioactive compounds from marine bacteria and fungi. Microb Biotechnol. 2010;3(5):544–63.
Article
CAS
PubMed
PubMed Central
Google Scholar
Delbridge L, Coulburn J, Fagerberg W, Tisa LS. Community profiles of bacterial endosymbionts in four species of Caulerpa. Symbiosis. 2004;37:335–44.
CAS
Google Scholar
Dobretsov S, Dahms HU, Qian PY. Inhibition of biofouling by marine microorganisms and their metabolites. Biofouling. 2006;22(1):43–54.
Article
CAS
PubMed
Google Scholar
Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods. 2013;10:996–8.
Article
CAS
PubMed
Google Scholar
Egan S, Harder T, Burke C, Steinberg P, Kjelleberg S, Thomas T. The seaweed holobiont: understanding seaweed–bacteria interactions. FEMS Microbiol Rev. 2013;37:462–76.
Article
CAS
PubMed
Google Scholar
El Bour M, Ali AI-B, Ktari L. Seaweeds epibionts: biodiversity and potential bioactivities. In: Méndez-Vilas A (ed.) Microbial pathogens and strategies for combating them: science, technology and education. Formatex Research Center, Badajoz, Spain. 2013; 1298–1306.
Engel S, Jensen PR, Fenical W. Chemical ecology of marine microbial defense. J Chem Ecol. 2002;28(10):1971–85.
Article
CAS
PubMed
Google Scholar
Faria M, Bordin N, Kizina J, Harder J, Devos D, Lage OM. Planctomycetes, attached to algal surfaces: insight into their genomes. Genomics. 2018;110(5):231–8.
Article
CAS
PubMed
Google Scholar
Fernández-Gómez B, Richter M, Schüler M, Pinhassi J, Acinas SG, González JM, Pedrós-Alió C. Ecology of marine Bacteroidetes: a comparative genomics approach. The ISME Journal. 2013;7(5):1026–37.
Article
CAS
PubMed
PubMed Central
Google Scholar
Goecke F, Thiel V, Wiese J, Labes A, Imhoff JF. Algae as an important environment for bacteria – phylogenetic relationships among new bacterial species isolated from algae. Phycologia. 2013;52(1):14–24.
Article
CAS
Google Scholar
Good IJ. The population frequencies of species and the estimation of population parameters. Biometrika. 1953;40(3–4):237–64.
Article
Google Scholar
Gromek SM, Suria AM, Fullmer MS, Garcia JL, Gogarten JP, Nyholm SV, Balunas MJ. Leisingera sp. JC1, a bacterial isolate from hawaiian bobtail squid eggs, produces indigoidine and differentially inhibits vibrios. Frontiers in. Microbiology. 2016;7:1342.
Google Scholar
Grossart HP, Kiørboe T, Tang K, Ploug H. Bacterial colonization of particles: growth and interactions. Appl Environ Microbiol. 2003;69(6):3500–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Harvey JBJ, Goff LJ. Genetic covariation of the marine fungal symbiont Haloguignar diairritans (Ascomycota, Pezizomycotina) with its algal hosts Cystoseira and Halidrys (Phaeophyceae, Fucales) along the west coast of North America. Fungal Biology. 2010;114:82–95.
Article
CAS
PubMed
Google Scholar
Hollants J, Leroux O, Leliaert F, Decleyre H, De Clerck O, Willems A. Who is in there? Exploration of endophytic bacteria within the siphonous green seaweed Bryopsis (Bryopsidales, Chlorophyta). PLoS One. 2011;6(10):e26458.
Article
CAS
PubMed
PubMed Central
Google Scholar
Horstmann U. Cultivation of the green alga, Caulerpa racemosa, in tropical waters and some aspects of its physiological ecology. Aquaculture. 1983;32:361–71.
Article
Google Scholar
Huang SY, Hadfield MG. Composition and density of bacterial biofilms determine larval settlement of the polychaete Hydroides elegans. Mar Ecol Prog Ser. 2003;260:161–72.
Article
CAS
Google Scholar
Jones KL, Mikulski CM, Barnhorst A, Doucette GJ. Comparative analysis of bacterioplankton assemblages from Karenia brevis bloom and nonbloom water on the West Florida shelf (Gulf of Mexico, USA) using 16S rRNA gene clone libraries. FEMS Microbiol Ecol. 2010;73:468–85.
CAS
PubMed
Google Scholar
Lachnit T, Blümel M, Imhoff JJF, Wahl M. Specific epibacterial communities on macroalgae: phylogeny matters more than habitat. Aquat Biol. 2009;5:181–6.
Article
Google Scholar
Lachnit T, Meske D, Wahl M, Harder T, Schmitz R. Epibacterial community patterns on marine macroalgae are host-specific but temporally variable. Environ Microbiol. 2011;13:655–65.
Article
PubMed
Google Scholar
Lachnit T, Wahl M, Harder T. Isolated thallus-associated compounds from the macroalga Fucus vesiculosus mediate bacterial surface colonization in the field similar to that on the natural alga. Biofouling. 2010;26(3):247–55.
Article
CAS
PubMed
Google Scholar
Lage OM, Bondoso J. Planctomycetes diversity associated with macroalgae. FEMS Microbiol Ecol. 2011;78:366–75.
Article
CAS
PubMed
Google Scholar
Leonard G. Marine fungi: their ecology and molecular diversity. Annu Rev Mar Sci. 2012;4(1):495–522.
Article
Google Scholar
Lewin RA. Saprospira grandis: a flexibacterium that can catch bacterial prey by “Ixotrophy”. Microb Ecol. 1997;34(3):232–6.
Article
CAS
PubMed
Google Scholar
Li JM, Li RH, Li J. Current research scenario for microcystins biodegradation – a review on fundamental knowledge, application prospects and challenges. Sci Total Environ. 2017;595:615–32.
Article
CAS
PubMed
Google Scholar
Longford SR, Tujula NA, Crocetti GR, Holmes AJ, Holmström C, Kjelleberg S, Steinberg PD, Taylor MW. Comparisons of diversity of bacterial communities associated with three sessile marine eukaryotes. Aquat Microb Ecol. 2007;48(3):217–29.
Article
Google Scholar
Luo HW, Moran MA. Evolutionary ecology of the marine roseobacter clade. Microbiol Mol Biol Rev. 2014;78(4):573–87.
Article
PubMed
PubMed Central
Google Scholar
Magoč T, Salzberg SL. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 2011;27(21):2957–63.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mary A, Mary V, Lorella A, Matias J. Rediscovery of naturally occurring seagrape Caulerpa lentillifera from the Gulf of Mannar and its mariculture. Curr Sci. 2009;97(10):1418–20.
Google Scholar
Menez EG, Calumpong HP. The genus Caulerpa from Central Visayas, Philippines. Washington: Smithsonian Institution Press; 1982.
Book
Google Scholar
Meusnier I, Olsen JL, Stam WT, Destombe C, Valero M. Phylogenetic analyses of Caulerpa taxifolia (Chlorophyta) and of its associated bacterial microflora provide clues to the origin of the Mediterranean introduction. Mol Ecol. 2001;10(4):931–46.
Article
CAS
PubMed
Google Scholar
Michael V, Frank O, Bartling P, Scheuner C, Göker M, Brinkmann H, Petersen J. Biofilm plasmids with a rhamnose operon are widely distributed determinants of the ‘swim-or-stick’ lifestyle in roseobacters. The ISME Journal. 2016;10(10):2498–513.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nagappan T, Vairappan CS. Nutritional and bioactive properties of three edible species of green algae, genus Caulerpa (Caulerpaceae). J Appl Phycol. 2014;26:1019–27.
Article
CAS
Google Scholar
Nash AK, Auchtung TA, Wong MC, Smith DP, Gesell JR, Ross MC, Stewart CJ, Metcalf GA, Muzny DM, Gibbs RA, Ajami NJ, Petrosino JF. The gut mycobiome of the human microbiome project healthy cohort. Microbiome. 2017;5(1):153.
Article
PubMed
PubMed Central
Google Scholar
Nguyen NH, Song Z, Bates ST, Branco S, Tedersoo L, Menke J, Schilling JS, Kennedy PG. FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecol. 2016;20(1):241–8.
Article
Google Scholar
Patel P, Callow ME, Joint I, Callow JA. Specificity in larval settlement-modifying response of bacterial biofilms towards zoospores of the marine alga Enteromorpha. Environ Microbiol. 2003;5(5):338–49.
Article
CAS
PubMed
Google Scholar
Penesyan A, Kjelleberg S, Egan S. Development of novel drugs from marine surface associated microorganisms. Marine Drugs. 2010;8(3):438–59.
Article
CAS
PubMed
PubMed Central
Google Scholar
Phillips JA, Conacher C, Horrocks J. Marine macroalgae from the Gulf of Carpentaria, tropical northern Australia. Aust Syst Bot. 1999;12:449–78.
Article
Google Scholar
Potin P. Intimate Associations Between Epiphytes, Endophytes, and Parasites of Seaweeds. In: Wiencke C., Bischof K. (eds), Seaweed Biology, Ecological Studies, vol 219. Springer, Berlin, Heidelberg; 2012.
Riedel T, Teshima H, Petersen J, Fiebig A, Davenport K, Dalingault H, Erkkila T, Gu W, Munk C, Xu Y, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, Göker M, Brinkhoff T, Klenk H-P. Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements. Stand Genomic Sci. 2013;8(3):389–402.
Article
CAS
PubMed
PubMed Central
Google Scholar
Salaün S, La Barre S, Dos Santos-Goncalvez M, Potin P, Haras D, Bazire A. Influence of exudates of the kelp Laminaria digitata on biofilm formation of associated and exogenous bacterial epiphytes. Microb Ecol. 2012;64(2):359–69.
Article
PubMed
Google Scholar
Scherer PI, Millard AD, Miller A, Schoen R, Raeder U, Geist J, Zwirglmaier K. Temporal dynamics of the microbial community composition with a focus on toxic cyanobacteria and toxin presence during harmful algal blooms in two south German lakes. Front Microbiol. 2017;8:2387.
Article
PubMed
PubMed Central
Google Scholar
Singh RP, Reddy CRK. Seaweed-microbial interactions: key functions of seaweed-associated bacteria. FEMS Microbiol Ecol. 2014;88(2):213–30.
Article
CAS
PubMed
Google Scholar
Suryanarayanan TS. Fungal Endosymbionts of Seaweeds. In: Raghukumar C. (eds) Biology of Marine Fungi. Progress in Molecular and Subcellular Biology, vol 53. Springer, Berlin, Heidelberg; 2012.
Suryanarayanan TS, Venkatachalam A, Thirunavukkarasu N, Ravishankar JP, Doble M, Venkatachalam G. Internal mycobiota of marine macroalgae from the Tamilnadu coast: distribution, diversity and biotechnological potential. Bot Mar. 2010;53:457–68.
Article
Google Scholar
Titlyanov EA, Titlyanova TV. Seaweed cultivation: methods and problems. Russ J Mar Biol. 2010;36:227–42.
Article
Google Scholar
Titlyanov EA, Titlyanova TV, Pham VH. Stocks and the use of economic marine macrophytes of Vietnam. Russ J Mar Biol. 2012;38(4):285–98.
Article
Google Scholar
Tujula NA, Crocetti GR, Burke C, Thomas T, Holmström C, Kjelleberg S. Variability and abundance of the epiphytic bacterial community associated with a green marine Ulvacean alga. The ISME Journal. 2010;4(2):301–11.
Article
PubMed
Google Scholar
Turner TR, James EK, Poole PS. The plant microbiome. Genome Biol. 2013;14(6):209–18.
Article
CAS
PubMed
PubMed Central
Google Scholar
Vairappan CS. Seasonal occurrences of epiphytic algae on the commercially cultivated red alga Kappaphycus Alvarezii (Solieriaceae, Gigartinales, Rhodophyta). J Appl Phycol. 2006;18:611–7.
Article
Google Scholar
Wagner BL, Lewis LC. Colonization corn, Zea mays, by the endopathogenic fungus Beauveria bassian. Appl Environ Microbiol. 2000;66(8):3468–73.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wegner CE, Richter-Heitmann T, Klindworth A, Klockow C, Richter M, Achstetter T, Glöckner FO, Harder J. Expression of sulfatases in Rhodopirellula baltica and the diversity of sulfatases in the genus Rhodopirellula. Mar Genomics. 2013;9:51–61.
Article
PubMed
Google Scholar
White JF Jr, Torres MS. Is plant endophyte-mediated defensive mutualism the result of oxidative stress protection? Physiol Plant. 2010;138(4):440–6.
Article
CAS
PubMed
Google Scholar
Wichard T, Beemelmanns C. Role of chemical mediators in aquatic interactions across the prokaryote-eukaryote boundary. J Chem Ecol. 2018;44:1008–21.
Article
CAS
PubMed
Google Scholar
Woodhouse JN, Kinsela AS, Collins RN, Bowling LC, Honeyman GL, Holliday JK, Neilan BA. Microbial communities reflect temporal changes in cyanobacterial composition in a shallow ephemeral freshwater lake. The ISME Journal. 2016;10:1337–51.
Article
CAS
PubMed
Google Scholar
Zhang HN, Feng J, Chen SN, Zhao ZF, Li BQ, Wang Y, Jia JY, Li SL, Wang Y, Yan MM, Lu KY, Hao HY. Geographical patterns of nirS gene abundance and nirS-type denitrifying bacterial community associated with activated sludge from different wastewater treatment plants. Microb Ecol. 2019;77(2):304–16.
Article
CAS
PubMed
Google Scholar
Zozaya-Valdes E, Egan S, Thomas T. A comprehensive analysis of the microbial communities of healthy and diseased marine macroalgae and the detection of known and potential bacterial pathogens. Front Microbiol. 2015;6(146):1–9.
Google Scholar
Zuccaro A, Schoch CL, Spatafora JW, Kohlmeyer J, Draeger S, Mitchell JI. Detection and identification of fungi intimately associated with the brown seaweed Fucus serratus. Appl Environ Microbiol. 2008;74:931–41.
Article
CAS
PubMed
Google Scholar
Zuccaro A, Schulz B, Mitchell JI. Molecular detection of ascomycetes associated with Fucus serratus. Mycol Res. 2003;107:1451–66.
Article
CAS
PubMed
Google Scholar