Tye-Din J, Anderson R: Immunopathogenesis of celiac disease. Curr Gastroenterol Rep. 2008, 10: 458-465.
Article
PubMed
Google Scholar
Vilppula1 A, Kaukinen K, Luostarinen L, Krekelä I, Patrikainen H, Valve R, Mäki M, Collin P: Increasing prevalence and high incidence of celiac disease in elderly people: a population-based study. BMC Gastroenterol. 2009, 9: 49-
Article
PubMed
PubMed Central
Google Scholar
Fasano A, Catassi C: Coeliac disease in children. Best Pract Res Cl Ga. 2005, 19: 467-478.
Article
Google Scholar
Cosnes J, Cellier C, Viola S, Colombel J, Michaud L, Sarles J, Hugot J, Ginies J, Dabadies A, Mouterde O, Allea M, Nion-Lameurier I, the group De'Tude Et De Recherche Sur La Maladie Coeliaque: Incidence of autoimmune diseases in celiac disease: protective effect of the gluten-free diet. Clin Gastroenterol Hepatol. 2008, 6: 753-758.
Article
PubMed
Google Scholar
Malandrino N, Capristo E, Farneti S, Leggio L, Abenavoli L, Addolorato G, Gasbarrini G: Metabolic and nutritional features in adult celiac patients. Dig Dis. 2008, 26: 128-133.
Article
PubMed
Google Scholar
Forsberg G, Fahlgren A, Horstedt P, Hammarström S, Hernell O, Hammarström ML: Presence of bacteria and innate immunity of intestinal epithelium in childhood coeliac disease. Am J Gastroenterol. 2004, 99: 894-904.
Article
PubMed
Google Scholar
Stene LC, Honeyman MC, Hoffenberg EJ, Haas JE, Sokol RJ, Emery L, Taki I, Norris JM, Erlich HA, Eisenbarth GS, Rewers M: Rotavirus infection frequency and risk of coeliac disease autoimmunity in early childhood: a longitudinal study. Am J Gastroenterol. 2006, 101: 2333-2340.
Article
PubMed
CAS
Google Scholar
Nadal I, Donant E, Ribes-Koninckx C, Calabuig M, Sanz Y: Imbalance in the composition of the duodenal microbiota of children with celiac disease. J Med Microbiol. 2007, 56: 1669-1674.
Article
PubMed
CAS
Google Scholar
Sanz Y, Sànchez E, Marzotto M, Calabuig M, Torrioni S, Dell'Aglio F: Differences in faecal bacterial communities in coeliac and healthy children as detected by PCR and denaturing gradient gel electrophoresis. FEMS Immunol Med Mic. 2007, 51: 562-568.
Article
CAS
Google Scholar
Di Cagno R, Rizzello CG, Gagliardi F, Ricciuti P, Ndagijimana M, Francavilla R, Guerzoni ME, Crecchio C, Gobbetti M, De Angelis M: Different fecal microbiotas and volatile organic compounds in treated and untreated children with celiac disease. Appl Environ Microbiol. 2009, 75: 3963-3971.
Article
PubMed
CAS
PubMed Central
Google Scholar
Montalto M, D'Onofrio F, Gallo A, Cazzato A, Gasbarrini G: Intestinal microbiota and its functions. Dig Liver Dis Suppl. 2009, 3: 30-34.
Article
Google Scholar
Sharma R, Young C, Neu J: Molecular modulation of intestinal epithelial barrier: contribution of microbiota. J Biomed Biotechnol. 2010, [http://www.hindawi.com/journals/jbb/2010/305879/]
Google Scholar
Sartor BR: Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: antibiotics, probiotics, and prebiotics. Gastroenterology. 2004, 126: 1620-1633.
Article
PubMed
Google Scholar
Thomas CM, Versalovic J: Probiotics-host communication: modulation of signaling pathways in the intestine. Gut Microbes. 2010, 1: 1-16.
Article
Google Scholar
Swidsinski A, Ladhoff A, Pernthaler A, Swidsinski S, Loening-Baucke V, Ortner M, Weber J, Hoffmann U, Schreiber S, Dietel M, Lochs H: Mucosal flora in inflammatory bowel disease. Gastroenterology. 2002, 122: 44-54.
Article
PubMed
Google Scholar
Collado MC, Calabuig M, Sanz Y: Differences between the fecal microbiota of celiac infants and healthy controls. Curr Issues Intest Microbiol. 2007, 8: 9-14.
PubMed
CAS
Google Scholar
Medina M, De Palma G, Ribes-Koninckx C, Calabuig M, Sanz Y: Bifidobacterium strains suppress in vitro the pro-inflammatory milieu triggered by the large intestinal microbiota of coeliac patients. J Inflamm. 2008, 5: 19-
Article
Google Scholar
De Angelis M, Rizzello CG, Fasano A, Clemente MG, De Simone C, Silano M, De-Vincenzi M, Losito I, Gobbetti M: VSL#3 probiotic preparation has the capacity to hydrolyze gliadin polypeptides responsible for celiac sprue. BBA - Mol Basis Dis. 2005, 1762: 80-89.
Article
Google Scholar
Lyton A, McKay L, Williams D, Garrett V, Gentry R, Sayler G: Development of Bacteroides 16S rRNA gene TaqMan-based Real-Time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl Environ Microbiol. 2006, 72: 4214-4224.
Article
Google Scholar
Kopečný J, Mrázek J, Fliegerová K, Kott T: Effect of gluten-free diet on microbes in the colon. Folia Microbiol. 2006, 51: 287-290.
Article
Google Scholar
Kopečný J, Mrázek J, Fliegerová K, Frühauf P, Tučková L: The intestinal microflora of childhood patients with indicated celiac disease. Folia Microbiol. 2008, 53: 214-216.
Article
Google Scholar
Bertini I, Calabro A, De Carli V, Luchinat C, Nepi S, Porfirio B, Renzi D, Saccenti E, Tenori L: The metabonomic signature of celiac disease. J Proteome Res. 2009, 8: 170-177.
Article
PubMed
CAS
Google Scholar
De Palma G, Nadal I, Medina M, Donat E, Ribes-Koninckx C, Calabuig M, Sanz Y: Intestinal dysbiosis and reduced immunoglobulin-coated bacteria associated with coeliac disease in children. BMC Microbiol. 2010, 10: 63-
Article
PubMed
PubMed Central
Google Scholar
Walter J, Hertel C, Tannock GW, Lis CM, Munro K, Hammes WP: Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weisella species in human feces by using group-specific PCR primers and denaturing gradient gel electrophoresis. Appl Environ Microbiol. 2001, 67: 2578-2585.
Article
PubMed
CAS
PubMed Central
Google Scholar
Vanhoutte T, Huys G, De Brandt E, Swings J: Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers. FEMS Microbiol Ecol. 2004, 48: 437-446.
Article
PubMed
CAS
Google Scholar
Schippa S, Iebba V, Barbato M, Di Nardo G, Totino V, Proietti Checchi M, Longhi C, Maiella G, Cucchiara S, Conte MP: A distinctive signature in celiac pediatric patients. BMC Microbiology. 2010, 10: 175-
Article
PubMed
PubMed Central
Google Scholar
Sánchez E, Donat E, Ribes-Koninckx C, Calabuig M, Sanz Y, Pathol C: Intestinal Bacteroides species associated with coeliac disease. J Clin Pathol. 2010, 63: 1105-1111.
Article
PubMed
Google Scholar
Dal Bello F, Hertel C: Oral cavity as natural reservoir for intestinal lactobacilli. Syst Appl Microbiol. 2006, 29: 69-76.
Article
PubMed
CAS
Google Scholar
Joossens M, Huys G, Cnockaert M, De Preter V, Verbeke K, Rutgeerts P, Vandamme P, Vermeire S: Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives. Gut. 2011, 60: 631-637.
Article
PubMed
Google Scholar
Larsen N, Vogensen FK, Gøbel R, Michaelsen KF, Al-Soud WA, Sørensen SJ, Hansen LH, Mogens Jakobsen M: Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bi-07. FEMS Microbiol Ecol. 2011, 75: 482-496.
Article
PubMed
CAS
Google Scholar
Jacobs DM, Deltimple N, van Velzen E, van Dorsten FA, Bingham M, Vaughan EE, van Duynhoven J: 1HNMR metabolite profiling of faeces as a tool to assess the impact of nutrition on the human microbiome. NMR Biomed. 2007, 21: 615-626.
Article
Google Scholar
Want EJ, Nordstrom A, Morita H, Siuzdak G: From exogenous to endogenous: the inevitable imprint of mass spectrometry in metabolomics. J Proteome Res. 2007, 6: 459-468.
Article
PubMed
CAS
Google Scholar
Ndagijimana M, Laghi L, Vitali B, Placucci G, Brigidi P, Guerzoni ME: Effect of a synbiotic food consumption on human gut metabolic profiles evaluated by 1H Nuclear Magnetic Resonance spectroscopy. Int J Food Microbiol. 2009, 134: 147-153.
Article
PubMed
CAS
Google Scholar
Vitali V, Ndagijimana M, Cruciani F, Carnevali P, Candela M, Guerzoni ME, Brigidi P: Impact of a synbiotic food on the gut microbial ecology and metabolic profiles. BMC Microbiol. 2010, 10: 4-
Article
PubMed
PubMed Central
Google Scholar
Cani PD, Bibiloni R, Knauf C, Waget A, Neyrinck AM, Delzenne NM, Burcelin R: Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice. Diabetes. 2008, 57: 1470-1481.
Article
PubMed
CAS
Google Scholar
Grieco A, Miele L, Pignataro G, Pompili M, Rapaccini GL, Gasbarrini G: Is coeliac disease a confounding factor in the diagnosis of NASH?. Gut. 2001, 49: 596-
Article
PubMed
CAS
PubMed Central
Google Scholar
Tjellström B, Stenhammar L, Högberg L, Fälth-Magnusson K, Magnusson KE, Midtvedt T, Sundqvist T, Norin E: Gut microflora associated characteristics in children with celiac disease. Am J Gastroenterol. 2005, 100: 2784-2788.
Article
PubMed
Google Scholar
Sakata T, Kojima T, Fujieda M, Takahashi M, Michibata T: Influences of probiotic bacteria on organic acid production by pig caecal bacteria in vitro. Proc Nutr Soc. 2003, 62: 73-80.
Article
PubMed
CAS
Google Scholar
Schneider SM, Girard-Pipau F, Filippi J, Hebuterne X, Moyse D, Hinojosa GC, Pompei A, Rampal P: Effects of Saccharomyces boulardii on fecal short-chain fatty acids and microflora in patients on long-term total enteral nutrition. World J Gastroenterol. 2005, 11: 6165-6169.
Article
PubMed
CAS
PubMed Central
Google Scholar
Walker A, Durie PR, Hamilton JR, Walker-Smith JA, Watkins JB: Pediatric gastrointestinal disease. pathophysiology, diagnosis, management. 2004, B.C. Decker, 4
Google Scholar
Wang WW, Qiao SY, Li DF: Amino acids and gut function. Amino Acids. 2009, 37: 105-110.
Article
PubMed
CAS
Google Scholar
Bernini P, Bertini I, Calabrò A, La Marca G, Lami G, Luchinat C, Renzi D, Tenori L: Are patients with potential celiac disease really potential? The answer of metabonomics. J Proteome Res. 2011, 10: 714-721.
Article
PubMed
CAS
Google Scholar
Vanhoutte T, Preter VD, Brandt ED, Verbeke K, Swings J, Huys G: Molecular monitoring of the fecal microbiota of healthy human subjects during administration of lactulose and Saccharomyces boulardii. Appl Environ Microbiol. 2006, 72: 5990-5997.
Article
PubMed
CAS
PubMed Central
Google Scholar
Bornay-Llinares FJ, da Silva AJ, Moura INS, Myjak P, Pietkiewicz H, Kruminis-Lozowska W, Graczyk TK, Pieniazek NJ: Identification of Cryptosporidium felis in a cow by morphologic and molecular methods. Appl Environ Microbiol. 1999, 65: 1455-1458.
PubMed
CAS
PubMed Central
Google Scholar
Macfarlane GT, Cummings JH, Allison C: Protein degradation by human intestinal bacteria. J Gen Microbiol. 1986, 132: 1647-1656.
PubMed
CAS
Google Scholar
Muyzer G, de Wall EC, Uitterlinden AG: Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA. Appl Environ Microbiol. 1993, 59: 695-670.
PubMed
CAS
PubMed Central
Google Scholar
Satokari R, Vaughan E, Akkermans A, Saarela M, de Vos W: Bifidobacterial diversity in human feces detected by genus-specific polymerase chain reaction and denaturing gradient gel electrophoresis. Appl Environ Microb. 2001, 67: 504-513.
Article
CAS
Google Scholar
Rademaker JLW, Louws FJ, Versalovic J, deBruijn FJ: Characterization of the diversity of ecological important microbes by rep-PCR genomic fingerprinting. Molecular microbial ecology manual. Edited by: Kowalchuk G, deBruijn F, Head I, Akkermans A, van Elsas J. 2004, Kluwer Academic Publishers, Dordrecht. The Netherlands, Chapter 5.3.2: 1-33. 2
Google Scholar
Macfarlane S, Quingley ME, Hopkins MJ, Newton DF, Macfarlane GT: Polysaccharide degradation by human intestinal bacteria during growth under multi-substrate limiting conditions in a three-stage continuous culture system. FEMS Microbiol Ecol. 1998, 26: 231-243.
Article
CAS
Google Scholar
Hopkins MJ, Sharp R, Macfarlane GT: Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles. Gut. 2001, 48: 198-205.
Article
PubMed
CAS
PubMed Central
Google Scholar
De Los Reyes-Gavilàn CG, Limsowtin GKY, Tailliez P, Se'chaud L, Accolas JP: A Lactobacillus helveticus-specific DNA probe detects restriction fragment length polymorphisms in this species. Appl Environ Microbiol. 1992, 58: 3429-3432.
PubMed
PubMed Central
Google Scholar
De Angelis M, Siragusa S, Berloco M, Caputo L, Settanni L, Alfonsi G, Amerio M, Grandi A, Ragni A, Gobbetti M: Selection of potential probiotic lactobacilli from pig feces to be used as additives in pelleted feeding. Res Microbiol. 2006, 157: 792-801.
Article
PubMed
Google Scholar
Ward LJH, Timmins MJ: Differentiation of Lactobacillus casei, Lactobacillus paracasei and Lactobacillus rhamnosus by polymerase chain reaction. Lett Appl Microbiol. 1999, 29: 90-92.
Article
PubMed
CAS
Google Scholar
Naser SM, Thompson F, Hoste B, Gevers D, Dawyndt P, Vancanneyt M, Swings J: Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology. 2005, 151: 2141-2150.
Article
PubMed
CAS
Google Scholar
De Angelis M, Siragusa S, Caputo L, Ragni A, Burzigotti R, Gobbetti M: Survival and persistence of Lactobacillus plantarum 4.1 and Lactobacillus reuteri 3S7 in the gastrointestinal tract of pigs. Vet Microbiol. 2007, 123: 133-144.
Article
PubMed
CAS
Google Scholar
De Angelis M, Corsetti A, Tosti N, Rossi J, Corbo MR, Gobbetti M: Characterization of non-starter lactic acid bacteria from Italian ewe cheeses based on phenotypic, genotypic and cell wall protein analyses. Appl Environ Microbiol. 2001, 67: 2011-2020.
Article
PubMed
CAS
PubMed Central
Google Scholar
Garner EG, Smith S, Costello BL, White P, Spencer R, Probert CSJ, Ratcliffe MN: Volatile organic compounds from feces and their potential for diagnosis of gastrointestinal disease. Faseb J. 2007, 21: 1675-1688.
Article
PubMed
CAS
Google Scholar
Ihaka R, Gentleman R: A language for data analysis and graphics. J Comput Graph Stat. 1996, 5: 299-314.
Google Scholar