Aas JA, Paster BJ, Stokes LN, Olsen I, Dewhirst FE: Defining the normal bacterial flora of the oral cavity. J Clin Microbiol. 2005, 43: 5721-5732. 10.1128/JCM.43.11.5721-5732.2005.
Article
PubMed
PubMed Central
Google Scholar
Kilian M: Streptococcus and Lactobacillus. Topley and Wilson's Microbiology and Microbial Infections. Edited by: Borriello P, Murray PR, Funke G. 2005, London: Hodder Arnold, 833-881.
Google Scholar
Marsh PD, Martin MV: Oral Microbiology. 2009, Edinburgh: Churchill Livingstone Elsevier, 5
Google Scholar
Marsh PD, Nyvad B: The oral microflora and biofilms on teeth. Dental Caries: The Disease and Its Clinical Management. Edited by: Fejerskov O, Kidd E. Chichester. 2008, UK: Wiley-Blackwell, 163-187. 2
Google Scholar
Baddour LM: Virulence factors among gram-positive bacteria in experimental endocarditis. Infect Immun. 1994, 62: 2143-2148.
PubMed
CAS
PubMed Central
Google Scholar
Husni RN, Gordon SM, Washington JA, Longworth DL: Lactobacillus bacterimia and endocarditis: Review of 45 cases. Clin Infect Dis. 1997, 25: 1048-1055. 10.1086/516109.
Article
PubMed
CAS
Google Scholar
Amann R, Fuchs BM: Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev Micro. 2008, 6: 339-348. 10.1038/nrmicro1888.
Article
CAS
Google Scholar
Zijnge V, van Leeuwen MBM, Degener JE, Abbas F, Thurnheer T, Gmür R, Harmsen HJM: Oral biofilm architecture on natural teeth. PLoS ONE. 2010, 5: e9321-10.1371/journal.pone.0009321.
Article
PubMed
PubMed Central
Google Scholar
Harmsen HJM, Elfferich P, Schut F, Welling GW: A 16S rRNA-targeted probe for detection of lactobacilli and enterococci in faecal samples by fluorescent in situ hybridization. Microb Ecol Health Dis. 1999, 11: 3-12. 10.1080/089106099435862.
Article
Google Scholar
Thurnheer T, Gmür R, Giertsen E, Guggenheim B: Automated fluorescent in situ hybridization for the specific detection and quantification of oral streptococci in dental plaque. J Microbiol Methods. 2001, 44: 39-47. 10.1016/S0167-7012(00)00226-8.
Article
PubMed
CAS
Google Scholar
The human oral microbiome database. [http://www.HOMD.org]
Chen T, Yu WH, Izard J, Baranova OV, Lakshmanan A, Dewhirst FE: The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database (Oxford). 2010, 2010: baq013-
Article
Google Scholar
Meier H, Amann R, Ludwig W, Schleifer KH: Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G+C content. System Appl Microbiol. 1999, 22: 186-196.
Article
CAS
Google Scholar
Manz W, Amann R, Ludwig W, Wagner M, Schleifer KH: Phylogenetic oligonucleotide probes for the major subclasses of proteobacteria: problems and solutions. System Appl Microbiol. 1992, 15: 593-600.
Article
Google Scholar
Fuchs BM, Glöckner FO, Wulf J, Amann R: Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Appl Environ Microbiol. 2000, 66: 3603-3607. 10.1128/AEM.66.8.3603-3607.2000.
Article
PubMed
CAS
PubMed Central
Google Scholar
Kubota K, Ohashi A, Imachi H, Harada H: Improved in situ hybridization efficiency with locked-nucleic-acid-incorporated DNA probes. Appl Environ Microbiol. 2006, 72: 5311-5317. 10.1128/AEM.03039-05.
Article
PubMed
CAS
PubMed Central
Google Scholar
Comelli EM, Guggenheim B, Stingele F, Neeser JR: Selection of dairy bacterial strains as probiotics for oral health. Eur J Oral Sci. 2002, 110: 218-224. 10.1034/j.1600-0447.2002.21216.x.
Article
PubMed
Google Scholar
Giertsen E, Guggenheim B, Thurnheer T, Gmür R: Microbiological aspects of an in situ model to study effects of antimicrobial agents on dental plaque ecology. Eur J Oral Sci. 2000, 108: 403-411. 10.1034/j.1600-0722.2000.108005403.x.
Article
PubMed
CAS
Google Scholar
Thomas RZ, van der Mei HC, van der Veen MH, de Soet JJ, Huysmans MCDNJM: Bacterial composition and red fluorescence of plaque in relation to primary and secondary caries next to composite: an in situ study. Oral Microbiol Immunol. 2008, 23: 7-13. 10.1111/j.1399-302X.2007.00381.x.
Article
PubMed
CAS
Google Scholar
Kawamura Y, Whiley RA, Shu SE, Ezaki T, Hardie JM: Genetic approaches to the identification of the mitis group within the genus Streptococcus. Microbiology. 1999, 145: 2605-2613.
Article
PubMed
CAS
Google Scholar
Kilian M, Poulsen K, Blomqvist T, Håvarstein LS, Bek-Thomsen M, Tettelin H, Sørensen UBS: Evolution of Streptococcus pneumoniae and its close commensal relatives. PLoS ONE. 2008, 3: e2683-10.1371/journal.pone.0002683.
Article
PubMed
PubMed Central
Google Scholar
Barr JJ, Blackall LL, Philip B: Further limitations of phylogenetic group-specific probes used for detection of bacteria in environmental samples. ISME J. 2010, 4: 1-3. 10.1038/ismej.2010.37.
Article
Google Scholar
Bowden G, Johnson J, Schachtele C: Characterization of Actinomyces with genomic DNA fingerprints and rRNA gene probes. J Dent Res. 1993, 72: 1171-1179. 10.1177/00220345930720080201.
Article
PubMed
CAS
Google Scholar
Sekar R, Pernthaler A, Pernthaler J, Warnecke F, Posch T, Amann R: An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl Environ Microbiol. 2003, 69: 2928-2935. 10.1128/AEM.69.5.2928-2935.2003.
Article
PubMed
CAS
PubMed Central
Google Scholar
Behrens S, Rühland C, Inacio J, Huber H, Fonseca A, Spencer-Martins I, Fuchs BM, Amann R: In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes. Appl Environ Microbiol. 2003, 69: 1748-1758. 10.1128/AEM.69.3.1748-1758.2003.
Article
PubMed
CAS
PubMed Central
Google Scholar
Yilmaz LS, Okten HE, Noguera DR: Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides. Appl Environ Microbiol. 2006, 72: 733-744. 10.1128/AEM.72.1.733-744.2006.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gmür R, Lüthi-Schaller H: A combined immunofluorescence and fluorescent in situ hybridization assay for single cell analyses of dental plaque microorganisms. J Microbiol Methods. 2007, 69: 402-405.
Article
PubMed
Google Scholar
Gmür R, Guggenheim B: Antigenic heterogeneity of Bacteroides intermedius as recognized by monoclonal antibodies. Infect Immun. 1983, 42: 459-470.
PubMed
PubMed Central
Google Scholar
Gmür R, Giertsen E, van der Veen MH, de Josselin de Jong E, ten Cate JM, Guggenheim B: In vitro quantitative light-induced fluorescence to measure changes in enamel mineralization. Clin Oral Invest. 2006, 10: 187-195.
Article
Google Scholar
Züger J, Lüthi-Schaller H, Gmür R: Uncultivated Tannerella BU045 and BU063 are slim segmented filamentous rods of high prevalence but low abundance in inflammatory disease-associated dental plaques. Microbiology. 2007, 153: 3817-3829.
Article
Google Scholar
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Lüßmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis AP, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH: ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32: 1363-1371. 10.1093/nar/gkh293.
Article
PubMed
CAS
PubMed Central
Google Scholar
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO: SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucl Acids Res. 2007, gkm864.
Google Scholar
Silva - Comprehensive Ribosomal RNA Database. [http://www.arb-silva.de/]
Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM: The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res. 2005, 33: D294-D296. 10.1093/nar/gki038.
Article
PubMed
CAS
PubMed Central
Google Scholar
Ribosomal Database Project. [http://rdp.cme.msu.edu]
Basic Local Alignment Search Tool (BLAST). [http://blast.ncbi.nlm.nih.gov/Blast.cgi]
Gmür R, Munson MA, Wade WG: Genotypic and phenotypic characterization of fusobacteria from Chinese and European patients with inflammatory periodontal diseases. Syst Appl Microbiol. 2006, 29: 120-130.
Article
PubMed
Google Scholar
Paster BJ, Bartoszyk IM, Dewhirst FE: Identification of oral streptococci using PCR-based, reverese-capture, checkerboard hybridization. Meth Cell Sci. 1998, 20: 223-231. 10.1023/A:1009715710555.
Article
Google Scholar
Guggenheim B, Gmür R, Galicia JC, Stathopoulou P, Benakanakere MR, Meier A, Thurnheer T, Kinane D: In vitro modeling of host-parasite interactions: the 'subgingival' biofilm challenge of primary human epithelial cells. BMC Microbiol. 2009, 9: 280-10.1186/1471-2180-9-280.
Article
PubMed
PubMed Central
Google Scholar
Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA: Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol. 1990, 56: 1919-1925.
PubMed
CAS
PubMed Central
Google Scholar