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  1. Fecal microbiota transplants (FMT) are an effective treatment for patients with gut microbe dysbiosis suffering from recurrent C. difficile infections. To further understand how FMT reconstitutes the patient’s gu...

    Authors: Ranjit Kumar, Craig L. Maynard, Peter Eipers, Kelly T. Goldsmith, Travis Ptacek, J. Aaron Grubbs, Paula Dixon, Donna Howard, David K. Crossman, Michael R. Crowley, William H. Benjamin Jr., Elliot J. Lefkowitz, Casey T. Weaver, J. Martin Rodriguez and Casey D. Morrow
    Citation: BMC Microbiology 2016 16:5
  2. In this study, we have evaluated the immunological status of hepatitis C virus (HCV)-infected patients aiming at identifying putative biomarkers associated with distinct degrees of liver fibrosis. Peripheral b...

    Authors: Soriane de Souza-Cruz, Marilú Barbieri Victória, Andréa Monteiro Tarragô, Allyson Guimarães da Costa, João Paulo Diniz Pimentel, Ericka Florêncio Pires, Lorene de Paula Araújo, Jordana Grazziela Coelho-dos-Reis, Matheus de Souza Gomes, Laurence Rodrigues Amaral, Andréa Teixeira-Carvalho, Olindo Assis Martins-Filho, Flamir da Silva Victória and Adriana Malheiro
    Citation: BMC Microbiology 2016 16:3
  3. Francisella tularensis, a gram-negative bacterium replicates intracellularly within macrophages and efficiently evades the innate immune response. It is able to infect and replicate wi...

    Authors: Knut Rennert, Peter Otto, Harald Funke, Otmar Huber, Herbert Tomaso and Alexander S. Mosig
    Citation: BMC Microbiology 2016 16:2
  4. The probiotic bacterium Phaeobacter inhibens strain S4Sm, isolated from the inner shell surface of a healthy oyster, secretes the antibiotic tropodithietic acid (TDA), is an excellent biofilm former, and increase...

    Authors: Wenjing Zhao, Christine Dao, Murni Karim, Marta Gomez-Chiarri, David Rowley and David R. Nelson
    Citation: BMC Microbiology 2016 16:1
  5. Clostridium difficile is one of the major nosocomial threats causing severe gastrointestinal infections. Compared to the well documented clinical symptoms, little is known about the pr...

    Authors: Meina Neumann-Schaal, Julia Danielle Hofmann, Sabine Eva Will and Dietmar Schomburg
    Citation: BMC Microbiology 2015 15:281
  6. The symptoms of Clostridium difficile infection are mediated primarily by two toxins, TcdA and TcdB, the expression of which is governed by a multitude of factors including nutrient availability, growth phase and...

    Authors: Stephanie E. Willing, Emma J. Richards, Lluis Sempere, Aaron G. Dale, Simon M. Cutting and Neil F. Fairweather
    Citation: BMC Microbiology 2015 15:280
  7. Russian Republic of Karelia is located at the Russian-Finnish border. It contains most of the historical Karelia land inhabited with autochthonous Karels and more recently migrated Russians. Although tuberculo...

    Authors: Igor Mokrousov, Anna Vyazovaya, Natalia Solovieva, Tatiana Sunchalina, Yuri Markelov, Ekaterina Chernyaeva, Natalia Melnikova, Marine Dogonadze, Daria Starkova, Neliya Vasilieva, Alena Gerasimova, Yulia Kononenko, Viacheslav Zhuravlev and Olga Narvskaya
    Citation: BMC Microbiology 2015 15:279
  8. Enteropathogenic Escherichia coli (EPEC) is distinguished mainly by the presence of EPEC adherence factor plasmid (pEAF) in typical EPEC (tEPEC) and its absence in atypical EPEC (aEPEC). The initial adherence to ...

    Authors: Claudia T. P. Moraes, Juliana M. Polatto, Sarita S. Rossato, Mariana Izquierdo, Danielle D. Munhoz, Fernando H. Martins, Daniel C. Pimenta, Mauricio J. Farfan, Waldir P. Elias, Ângela S. Barbosa and Roxane M. F. Piazza
    Citation: BMC Microbiology 2015 15:278
  9. Anaerobic digestion is a biological process in which a consortium of microorganisms transforms a complex substrate into methane and carbon dioxide. A good understanding of the interactions between the populati...

    Authors: Vimac Nolla-Ardèvol, Miriam Peces, Marc Strous and Halina E. Tegetmeyer
    Citation: BMC Microbiology 2015 15:277
  10. The vaginal microbiota can impact the susceptibility of women to bacterial vaginosis (BV) and sexually transmitted infections (STIs). BV is characterized by depletion of Lactobacillus spp., an overgrowth of anaer...

    Authors: Laura M. Breshears, Vonetta L. Edwards, Jacques Ravel and Marnie L. Peterson
    Citation: BMC Microbiology 2015 15:276
  11. Microbial contamination of pharmaceuticals poses a great problem to the pharmaceutical manufacturing process, especially from a medical as well as an economic point of view. Depending upon the product and its ...

    Authors: Hend Zeitoun, Mervat Kassem, Dina Raafat, Hamida AbouShlieb and Nourhan Fanaki
    Citation: BMC Microbiology 2015 15:275
  12. Small-molecule compounds that inhibit human immunodeficiency virus type 1 (HIV-1) infection can be used not only as drug candidates, but also as reagents to dissect the life cycle of the virus. Thus, it is des...

    Authors: Ru Bai, Xing-Jie Zhang, Yan-Li Li, Jing-Ping Liu, Hong-Bin Zhang, Wei-Lie Xiao, Jian-Xin Pu, Han-Dong Sun, Yong-Tang Zheng and Li-Xin Liu
    Citation: BMC Microbiology 2015 15:274
  13. Bacteriophages constitute a great threat to the activity of lactic acid bacteria used in industrial processes. Several factors can influence the infection cycle of bacteriophages. That is the case of the physi...

    Authors: Mariángeles Briggiler Marcó, Jorge Reinheimer and Andrea Quiberoni
    Citation: BMC Microbiology 2015 15:273
  14. Chromobacterium violaceum (C. violaceum) occurs abundantly in a variety of ecosystems, including ecosystems that place the bacterium under stress. This study assessed the adaptability ...

    Authors: Diogo Castro, Isabelle Bezerra Cordeiro, Paula Taquita, Marcos Nogueira Eberlin, Jerusa Simone Garcia, Gustavo Henrique M. F. Souza, Marco Aurélio Zezzi Arruda, Edmar V. Andrade, Spartaco A. Filho, J. Lee Crainey, Luis Lopez Lozano, Paulo A. Nogueira and Patrícia P. Orlandi
    Citation: BMC Microbiology 2015 15:272
  15. Saccharomyces cerevisiae multicellular communities are sustained by a scaffolding extracellular matrix, which provides spatial organization, and nutrient and water availability, and en...

    Authors: Fábio Faria-Oliveira, Joana Carvalho, Célia Ferreira, Maria Luisa Hernáez, Concha Gil and Cândida Lucas
    Citation: BMC Microbiology 2015 15:271
  16. There are still numerous protein subfamilies within families and superfamilies that do not yet have conclusive empirical experimental evidence providing a specific function. These proteins persist in databases...

    Authors: Laziana Ahmad, Teng Loong Hung, Nor Azurah Mat Akhir, Rahmah Mohamed, Sheila Nathan and Mohd Firdaus-Raih
    Citation: BMC Microbiology 2015 15:270
  17. Nucleotide sugar transporters (NSTs) play an essential role in translocating nucleotide sugars into the lumen of the endoplasmic reticulum and Golgi apparatus to be used as substrates in glycosylation reaction...

    Authors: Carlos Gustavo Baptista, Elizabeth Cristina Rodrigues, Patricia Morking, Amanda Klinke, Maria Luiza Zardo, Maurílio José Soares, Alessandra Melo de Aguiar, Samuel Goldenberg and Augusto Savio Peixoto Ramos
    Citation: BMC Microbiology 2015 15:269
  18. The zoonosis bovine tuberculosis (TB) is known to be responsible for a considerable proportion of extrapulmonary TB. In Mozambique, bovine TB is a recognised problem in cattle, but little has been done to eval...

    Authors: Sofia Omar Viegas, Solomon Ghebremichael, Leguesse Massawo, Matos Alberto, Fabíola Couto Fernandes, Eliane Monteiro, David Couvin, José Maiane Matavele, Nalin Rastogi, Margarida Correia-Neves, Adelina Machado, Carla Carrilho, Ramona Groenheit, Gunilla Källenius and Tuija Koivula
    Citation: BMC Microbiology 2015 15:268
  19. Fungi are ubiquitous in nature and have evolved over time to colonize a wide range of ecosystems including pest control. To date, most research has focused on the hypocrealean genera Beauveria bassiana, which is ...

    Authors: Hongxia Liu, Xusheng Zhao, Mingxin Guo, Hui Liu and Zhiming Zheng
    Citation: BMC Microbiology 2015 15:267
  20. The aim of this study was to employ high-throughput DNA sequencing to assess the incidence of bacteria with biogenic amine (BA; histamine and tyramine) producing potential from among 10 different cheeses varie...

    Authors: Daniel J. O’Sullivan, Vincenzo Fallico, Orla O’Sullivan, Paul L. H. McSweeney, Jeremiah J. Sheehan, Paul D. Cotter and Linda Giblin
    Citation: BMC Microbiology 2015 15:266
  21. Dengue virus (DENV), the most widely prevalent arbovirus, continues to be a threat to human health in the tropics and subtropics. Early and rapid detection of DENV infection during the acute phase of illness i...

    Authors: Sheng-feng Hu, Miao Li, Lan-lan Zhong, Shi-miao Lu, Ze-xia Liu, Jie-ying Pu, Jin-sheng Wen and Xi Huang
    Citation: BMC Microbiology 2015 15:265
  22. S. aureus is an important agent of colonization and infection in liver transplant patients. It harbors several virulence factors that can increase its pathogenicity. However, studies o...

    Authors: Larissa Marques de Oliveira, Inneke Marie van der Heijden, George R. Golding, Edson Abdala, Maristela P. Freire, Flavia Rossi, Luiz C. D’ alburquerque, Anna S. Levin and Silvia F. Costa
    Citation: BMC Microbiology 2015 15:264
  23. Nontypeable Haemophilus influenzae (NTHi) is one of the most common Gram-negative pathogens in otitis media and exacerbation of chronic obstructive pulmonary disease. NTHi has been reported to invade bronchial ep...

    Authors: Masaki Ikeda, Noriyuki Enomoto, Dai Hashimoto, Tomoyuki Fujisawa, Naoki Inui, Yutaro Nakamura, Takafumi Suda and Toshi Nagata
    Citation: BMC Microbiology 2015 15:263
  24. Antibiotic resistance genes can be targeted by antisense agents, which can reduce their expression and thus restore cellular susceptibility to existing antibiotics. Antisense inhibitors can be gene and pathoge...

    Authors: Shan Goh, Anette Loeffler, David H. Lloyd, Sean P. Nair and Liam Good
    Citation: BMC Microbiology 2015 15:262
  25. Throughout Africa, food fermentations are still driven by indigenous microorganisms which influence the nutritional, organoleptic and safety of the final products. However, for improved safety, consistent qual...

    Authors: James Owusu-Kwarteng, Kwaku Tano-Debrah, Fortune Akabanda and Lene Jespersen
    Citation: BMC Microbiology 2015 15:261
  26. The spread of carbapenem resistant Enterobacteriaceae (CRE) is an emerging clinical problem, of great relevance in Europe and worldwide. The aim of this study was the molecular epidemiology of CRE isolates in Val...

    Authors: Mariateresa Del Franco, Laura Paone, Roberto Novati, Claudio G. Giacomazzi, Maria Bagattini, Chiara Galotto, Pier Giorgio Montanera, Maria Triassi and Raffaele Zarrilli
    Citation: BMC Microbiology 2015 15:260
  27. Burkholderia pseudomallei (Bp) and Burkholderia mallei (Bm) are Gram-negative facultative intracellular pathogens, which are the causative agents of melioidosis and glanders, respectiv...

    Authors: Chih-Yuan Chiang, Ricky L. Ulrich, Melanie P. Ulrich, Brett Eaton, Jenifer F. Ojeda, Douglas J. Lane, Krishna P. Kota, Tara A. Kenny, Jason T. Ladner, Samuel P. Dickson, Kathleen Kuehl, Rahul Raychaudhuri, Mei Sun, Sina Bavari, Mark J. Wolcott, David Covell…
    Citation: BMC Microbiology 2015 15:259
  28. Bloodstream infections represent serious conditions carrying a high mortality and morbidity rate. Rapid identification of microorganisms and prompt institution of adequate antimicrobial therapy is of utmost im...

    Authors: Aleksandra Jakovljev and Kåre Bergh
    Citation: BMC Microbiology 2015 15:258
  29. Proliferating cell nuclear antigen (PCNA/POL30) an essential protein forms a homotrimeric ring encircling dsDNA and serves as a molecular scaffold to recruit various factors during DNA replication, repair and ...

    Authors: Kodavati Manohar and Narottam Acharya
    Citation: BMC Microbiology 2015 15:257
  30. 14-3-3 proteins comprise a family of eukaryotic multifunctional proteins involved in several cellular processes. The Pb14-3-3 of Paracoccidioides brasiliensis seems to play an important role in the Paracoccidioid...

    Authors: Patricia Akemi Assato, Julhiany de Fátima da Silva, Haroldo Cesar de Oliveira, Caroline Maria Marcos, Danuza Rossi, Sandro Roberto Valentini, Maria José Soares Mendes-Giannini, Cleslei Fernando Zanelli and Ana Marisa Fusco-Almeida
    Citation: BMC Microbiology 2015 15:256
  31. Antibiotics of the β-lactam group are able to alter the shape of the bacterial cell wall, e.g. filamentation or a spheroplast formation. Early determination of antimicrobial susceptibility may be complicated b...

    Authors: Marlene Fredborg, Flemming S. Rosenvinge, Erik Spillum, Stine Kroghsbo, Mikala Wang and Teis E. Sondergaard
    Citation: BMC Microbiology 2015 15:255
  32. Seafood is not considered the natural habitat of Salmonella except the river fish, but still, the incidence of Salmonella in seafood is in a steady rise. By extending our understanding of Salmonella growth dynami...

    Authors: Rakesh Kumar, Tirtha K. Datta and Kuttanappilly V. Lalitha
    Citation: BMC Microbiology 2015 15:254
  33. Galactofuranose (Galf)-containing glycoconjugates are present in numerous microbes, including filamentous fungi where they are important for morphology, virulence and maintaining cell wall integrity. The incorpor...

    Authors: Joohae Park, Boris Tefsen, Marc J. Heemskerk, Ellen L. Lagendijk, Cees A. M. J. J. van den Hondel, Irma van Die and Arthur F. J. Ram
    Citation: BMC Microbiology 2015 15:253
  34. Microbiological assays require accurate and reproducible preparation of bacterial inocula. Inocula prepared on different days by different individuals can vary significantly from experiment to experiment. This...

    Authors: Travis B. Nielsen, Kevin W. Bruhn, Paul Pantapalangkoor, Justin L. Junus and Brad Spellberg
    Citation: BMC Microbiology 2015 15:252
  35. The denitrifying betaproteobacterium "Aromatoleum aromaticum" EbN1 anaerobically utilizes a multitude of aromatic compounds via specific peripheral degradation routes. Compound-specific formation of these catabol...

    Authors: Imke Büsing, Mirjam Kant, Marvin Dörries, Lars Wöhlbrand and Ralf Rabus
    Citation: BMC Microbiology 2015 15:251
  36. Escherichia coli Nissle 1917 (EcN) is a probiotic used in the treatment of intestinal diseases. Although it is considered safe, EcN is closely related to the uropathogenic E. coli stra...

    Authors: Lorena Toloza, Rosa Giménez, María Jose Fábrega, Carina Shianya Alvarez, Laura Aguilera, María Alexandra Cañas, Raquel Martín-Venegas, Josefa Badia and Laura Baldomà
    Citation: BMC Microbiology 2015 15:250
  37. Knowledge of the natural occurrence and community structure of entomopathogenic fungi is important to understand their ecological role. Species of the genus Metarhizium are widespread in soils and have recently b...

    Authors: Chad A. Keyser, Henrik H. De Fine Licht, Bernhardt M. Steinwender and Nicolai V. Meyling
    Citation: BMC Microbiology 2015 15:249
  38. The human pathogenic mold Aspergillus fumigatus is able to form a complex biofilm embedded in extracellular matrix. Biofilms confer antimicrobial resistance and it is well known that aspergillosis is often refrac...

    Authors: Federica Perdoni, Paola Signorelli, Daniela Cirasola, Anna Caretti, Valentina Galimberti, Marco Biggiogera, Paolo Gasco, Claudia Musicanti, Giulia Morace and Elisa Borghi
    Citation: BMC Microbiology 2015 15:248
  39. Duck viral pathogens primarily include the avian influenza virus (AIV) subtypes H5, H7, and H9; duck hepatitis virus (DHV); duck tembusu virus (DTMUV); egg drop syndrome virus (EDSV); duck enteritis virus (DEV...

    Authors: Yan-fang Zhang, Zhi-xun Xie, Li-ji Xie, Xian-wen Deng, Zhi-qin Xie, Si-si Luo, Li Huang, Jiao-ling Huang and Ting-ting Zeng
    Citation: BMC Microbiology 2015 15:247
  40. Due to its extraordinary chemical properties, the cysteine amino acid residue is often involved in protein folding, electron driving, sensing stress, and binding metals such as iron or zinc. Lactococcus lactis, a...

    Authors: Célia Roussel, Bénédicte Cesselin, Rémy Cachon and Philippe Gaudu
    Citation: BMC Microbiology 2015 15:246
  41. Despite widespread use, optimum choice of antimicrobial agents, concentrations, combinations and exposure times have not been determined for antibiotic lock technique (ALT). Our objective was to evaluate the e...

    Authors: Diego Parra, Alejandro Peña-Monje, Nieves María Coronado-Álvarez, José Hernández-Quero and Jorge Parra-Ruiz
    Citation: BMC Microbiology 2015 15:245
  42. Lipopolysaccharides (LPS) are complex, amphipathic biomolecules that constitute the major surface component of Gram-negative bacteria. Leptospira, unlike other human-pathogenic spirochetes, produce LPS, which is ...

    Authors: Kailash P. Patra, Biswa Choudhury, Michael M. Matthias, Sheyenne Baga, Keya Bandyopadhya and Joseph M. Vinetz
    Citation: BMC Microbiology 2015 15:244
  43. Columnaris disease caused by Flavobacterium columnare is a serious problem in aquaculture, annually causing large economic losses around the world. Despite considerable research, the molecular epidemiology of F. ...

    Authors: Roghaieh Ashrafi, Katja Pulkkinen, Lotta-Riina Sundberg, Nina Pekkala and Tarmo Ketola
    Citation: BMC Microbiology 2015 15:243
  44. Fusarium head blight (FHB) is a severe disease caused by different Fusarium species, which affects a wide range of cereal crops, including wheat. It determines from 10 to 30 % of yield loss in Europe. Chemical fu...

    Authors: Loredana Baffoni, Francesca Gaggia, Nereida Dalanaj, Antonio Prodi, Paola Nipoti, Annamaria Pisi, Bruno Biavati and Diana Di Gioia
    Citation: BMC Microbiology 2015 15:242
  45. Lactobacillus plantarum is a lactic acid bacterium (LAB) of considerable industrial interest since it has an important role in the production of fermented food. In the present study, t...

    Authors: Haiyan Xu, Wenjun Liu, Wenyi Zhang, Jie Yu, Yuqin Song, Bilige Menhe, Heping Zhang and Zhihong Sun
    Citation: BMC Microbiology 2015 15:241
  46. Biosurfactants are surface-active biomolecules with great applicability in the food, pharmaceutical and oil industries. Endospore-forming bacteria, which survive for long periods in harsh environments, are des...

    Authors: Camila Rattes de Almeida Couto, Vanessa Marques Alvarez, Joana Montezano Marques, Diogo de Azevedo Jurelevicius and Lucy Seldin
    Citation: BMC Microbiology 2015 15:240
  47. The genus Vibrio is clinically significant and major pathogenic Vibrio species causing human Vibrio infections are V. cholerae, V. parahaemolyticus, V. vulnificus, V. alginolyticus and V. mimicus. In this study, ...

    Authors: Hyun-Joong Kim, Ji-Oh Ryu, Shin-Young Lee, Ei-Seul Kim and Hae-Yeong Kim
    Citation: BMC Microbiology 2015 15:239
  48. Mutant Allium sativum leaf agglutinin (mASAL) is a potent, biosafe, antifungal protein that exhibits fungicidal activity against different phytopathogenic fungi, including Rhizoctonia solani.

    Authors: Prithwi Ghosh, Amit Roy, Daniel Hess, Anupama Ghosh and Sampa Das
    Citation: BMC Microbiology 2015 15:237
  49. Streptococcus thermophilus is a major dairy starter used for manufacturing of dairy products. In the present study, we developed a multilocus sequence typing (MLST) scheme for this imp...

    Authors: Jie Yu, Zhihong Sun, Wenjun Liu, Xiaoxia Xi, Yuqin Song, Haiyan Xu, Qiang Lv, Qiuhua Bao, Bilige Menghe and Tiansong Sun
    Citation: BMC Microbiology 2015 15:236

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