A solute-binding protein for iron transport in Streptococcus iniae
© Zou et al; licensee BioMed Central Ltd. 2010
Received: 13 August 2010
Accepted: 1 December 2010
Published: 1 December 2010
Streptococcus iniae (S. iniae) is a major pathogen that causes considerable morbidity and mortality in cultured fish worldwide. The pathogen's ability to adapt to the host affects the extent of infection, hence understanding the mechanisms by which S. iniae overcomes physiological stresses during infection will help to identify potential virulence determinants of streptococcal infection. Grow S. iniae under iron-restricted conditions is one approach for identifying host-specific protein expression. Iron plays an important role in many biological processes but it has low solubility under physiological condition. Many microorganisms have been shown to be able to circumvent this nutritional limitation by forming direct contacts with iron-containing proteins through ATP-binding cassette (ABC) transporters. The ABC transporter superfamilies constitute many different systems that are widespread among living organisms with different functions, such as ligands translocation, mRNA translation, and DNA repair.
An ABC transporter system, named as mtsABC (metal transport system) was cloned from S. iniae HD-1, and was found to be involved in heme utilization. mtsABC is cotranscribed by three downstream genes, i.e., mtsA, mtsB, and mtsC. In this study, we cloned the first gene of the mtsABC transporter system (mtsA), and purified the corresponding recombinant protein MtsA. The analysis indicated that MtsA is a putative lipoprotein which binds to heme that can serve as an iron source for the microorganism, and is expressed in vivo during Kunming mice infection by S. iniae HD-1.
This is believed to be the first report on the cloning the ABC transporter lipoprotein from S. iniae genomic DNA. Together, our data suggested that MtsA is associated with heme, and is expressed in vivo during Kunming mice infection by S. iniae HD-1 which indicated that it can be a potential candidate for S. iniae subunit vaccine.
Streptococcus iniae (S. iniae) is a hemolytic Gram-positive coccus that is a major pathogen of culture fish. It has been associated with disease outbreak in several species of freshwater and marine fish cultured worldwide, including tilapia [1, 2], barramundi , channel catfish , hybrid striped bass [1, 5], Japanese flounder [6, 7], olive flounder , rabbitfish , and rainbow trout [9, 10]. Streptococcal infection can lead to serious symptoms such as meningoencephalitis and generalized septicaemia with high mortality rates of up to 50% [9, 11]. S. iniae is also known to be an opportunistic pathogen that can cause fulminant soft tissue infection in humans, such as bacteremic cellulitis, septicarthritis, and endocarditis . Identifying potential virulence determinants of streptococcal infection will eventually help to the control and eradication of the disease.
Iron plays a significant role in many biological processes and is vital for several metabolic processes. Moreover, many proteins such as cytochromes and tricarboxylic acid metalloenzymes use iron as a cofactor . Iron is also required for important cellular functions such as the transport and storage of oxygen and as a catalyst in electron transport processes . The levels of several virulence determinants produced by bacterial pathogens, such as toxins and hemolysins, are depressed under iron-restricted conditions . Despite its abundance in the natural environment, iron has low solubility under physiological conditions. Moreover, it may be associated with heme or hemo-proteins such as transferrin, lactoferrin, haptoglobin, hemoglobin, and ferritin and such forms do not readily support the growth of microorganisms. Many microorganisms circumvent this nutritional limitation by forming direct contacts with iron-containing proteins through ATP-binding cassette (ABC) transporters.
The ABC transporter superfamilies constitute many different systems that are widespread among living organisms and show different functions, such as ligands translocation, mRNA translation, and DNA repair. The general principle of ABC transport systems involves the ligands translocation through a pore formed by two integral membrane protein domains. This is accompanied by ATP hydrolysis through two nucleotide-binding domains associated with the cytoplasmic side of the pore. In bacteria, ligand translocation is preceded by interaction with an accessory component, i.e., the periplasmic-binding protein .
In this study, an ABC transporter member, named as mtsABC (metal ABC transport system) was cloned from S. iniae HD-1 which is cotranscribed by three genes and was shown to share amino acid sequence homology with the metal ABC transport proteins of other Gram-positive and Gram-negative bacteria. BLAST-mediated sequences similarity searches of the derived amino acid sequences of the mtsABC operon indicated that mtsA encodes a metal solute-binding lipoprotein, mtsB encodes an ATP-binding protein (ATPase), and mtsC encodes a transmembrane permease protein. Our data showed that MtsA is a lipoprotein, and associated with heme. Moreover, this protein is expressed in vivo during Kunming mice infection by S. iniae HD-1. These results provide information on the role of MtsA in heme utilization and the possibility of using MtsA as an effective S. iniae vaccine candidate.
Cloning and reverse transcriptase-PCR analysis of mtsABC
Sequence analysis of mtsABC
Purification of recombinant MtsA
Subcellular localization of MtsA
To detect surface exposure of MtsA, cells of S. iniae HD-1 cells were harvested, washed, centrifuged, and resuspended in PBS. The cells were subjected to proteinase K (5 μg ml-1) treatment with gentle agitation at room temperature for 1 h, and the cells were collected. Western blotting showed that peptide fragments in the cells can be detected after 1 h incubation with proteinase K. However, when the cell wall extracts and protoplasts were used in the experiment, it were completely hydrolyzed and no peptide fragments were detected (Figure 5B). Together, this result indicated that MtsA is not exposure on surface, but is on the outside of the cytoplasmic membrane and is buried inside the cell wall.
MtsA had heme-binding activity
To determine whether iron is present and its amount in purified MtsA, the ICP-AES analysis were performed. The results showed that Fe was present (Additional file 1, Table S5) in purified MtsA; however, four other bivalent metallic elements Ca, Mg, Zn and Mn were not detected. The amount of iron present in purified MtsA (20 μM) was 1.43, 1.38, and 1.33 mg L-1, in three independent purification experiments respectively.
In vivo production of MtsA during S. iniae HD-1 infection
Heme is an important nutrient for several bacteria and can serves as a source of essential iron. The most abundant source of iron in the body is heme, so it is not surprising to find that pathogenic bacteria can use heme as an iron source . The presence of the central iron atom in heme allows it to undergo reversible oxidative change and act as a virulence-regulated determinant [30–36]. It is necessary for bacterial pathogens to acquire sufficient iron from their surroundings, and scavenging heme from the environment requires much less effort than synthesizing it de novo[30, 34].
Acquiring iron from the micro-environment is important for the growth of bacterial pathogens. Pathogens often use low environmental iron levels as a signal to induce virulence genes . Many pathogenic bacteria secrete exotoxins, proteases, and siderophores to rapidly increase the local concentration of free heme , and it is common for pathogens to directly acquire iron from host iron-binding proteins by using receptor-mediated transport systems specific for host-iron complexes .
To define the role of MtsA in heme utilization, the binding activity and subcellular localization of purified MtsA were investigated. The coding sequence of mtsA was cloned into the expression vector pet-32a-c (+). The major induced protein in E. coli (BL21) migrated as a 49.5-kDa band in SDS-PAGE gels; this size is consistent with the predicted molecular mass of MtsA. The 49.5-kDa MtsA was purified by Ni2+ affinity chromatography and reacted with anti-MtsA antibodies from infected mice to confirm the in vivo production of MtsA. The UV-visible absorbance spectrum of KatG is a typical heme-containing protein, and the results of the pyridine hemochrome assay indicated that MtsA is associated with heme. Moreover, measurements of the iron level by ICP-AES indicated that purified MtsA is a holo-protein that is associated with iron.
In general, there are four major types of cell surface display proteins in Gram-positive bacteria, which are as follows: proteins anchored to the cytoplasmic membrane by hydrophobic transmembrane domains; lipoproteins that are covalently attached to membrane lipids after cleavage by signal peptides II; proteins that contain the C-terminal LPXTG-like motif and are covalently attached to peptidoglycan by sortase; and proteins that recognize some cell wall components by specific domains . ABC transporters are integral membrane proteins that transport diverse substrates across lipid bilayers . In bacteria, ABC transporters catalyze the uptake of essential nutrients or the extrusion of toxic substances . ABC importers, present only in prokaryotes, require a binding protein that delivers the captured substrate to the external face of the transporter . As MtsA is a solute-binding protein of the ABC transporter, its major function is presumed to be the capture and transfer of iron compounds to the downstream gene of the iron transport system of S. iniae HD-1. The signal peptide pattern analysis and Triton X-114 extraction results confirmed that MtsA is a lipoprotein. This result is reliable because the original G+LPP pattern was present in the analysis of the signal peptide features of 33 experimentally verified lipoproteins. Lipoproteins in Gram-positive bacteria are cell envelope proteins anchored to the outer leaflet of the plasma membrane. Lipid modification is achieved through covalent addition of a diacylglyceride to an indispensable cysteine residue in the lipoprotein signal peptide that provides a common anchoring mechanism for what is now recognized as an abundant and functionally diverse class of peripheral membrane proteins . In Gram-positive bacteria, substrate-binding proteins of ABC transporters are typically lipoproteins [41, 42], and the western blotting results is consistent with the notion that MtsA is an ABC transporter lipoprotein [43, 44].
The results of this study indicated that mtsABC is a member of the ABC transporter family. MtsA protein is a solute-binding protein that can bind to heme and facilitate the latter's use as a substrate by the S. iniae. Western blotting indicated that MtsA is produced in vivo during experimental S. iniae HD-1 infection, and MtsA may be a potentially useful S. iniae protein vaccine candidate. Further studies are needed to clarify the role of MtsA in the utilization of other iron compounds and other important cations, and to establish its candidacy as a useful S. iniae vaccine component.
In summary, this study presents MtsA as a novel solute-binding protein that can contribute to iron transport. This is the first ABC transporter member to be identified from S. iniae. We have shown that MtsA is a lipoprotein which can bind to heme, and is expressed in vivo during Kunming mice infection by S. iniae HD-1. More importantly, this is the first report on the cloning of ABC transporter lipoprotein from S. iniae genomic DNA, and its immunogenicity is indicative of its possible use as an S. iniae subunit vaccine.
Bacterial strains and growth conditions
Streptococcus iniae HD-1 was isolated from Threeband sweetlips (Plectorhynchus cinctus) from Guangdong province, PRC. The microorganism was stored in our lab and cultured according to the methods described by Zhou et al. Briefly, S. iniae isolate HD-1 cells were grown in brain heart infusion broth (BHI, Oxoid Ltd.), and BHI broth with 1.5% agar (Guangdong Huankai Microbial Sci. & Tech, Co., Ltd.) was used as the solid medium. Escherichia coli DH5α and BL21 (DE3) strains (Beijing Newprobe Biotechnology Co., Ltd.) were used for gene cloning and protein expression, respectively.
Cloning and reverse transcription analysis of mtsABC
Genomic DNA was extracted from the S. iniae HD-1 strain using the Wizard genomic DNA purification kit (Promega Co., Ltd.), as recommended by the manufacturer, and the material was quantified by measuring the absorbance at 260 nm. PCR was carried out with 1 μg of DNA using the primers listed in Additional file 1, Table S6. The primers were designed based on the conserved regions of the published amino acid sequence of metal ABC transporter (Additional file 1, Table S6-1), and the full-length product was obtained by SiteFinding-PCR (Additional file 1, Table S6-2, 6-3), as described by Tai et al. The PCR products were sequenced to rule out spurious mutations (Invitrogen Co., Ltd.).
S. iniae HD-1 cells grow to the logarithmic phase were harvested by centrifugation, and total RNA was extracted by the Pure Yield™ RNA midiprep system (Promega, USA, Co., Ltd.). Total RNA was then incubated with RNase I at 37°C for 30 min to remove the contaminating genomic DNA. The material was quantified spectrophotometrically by ultraviolet absorption spectrometry (CE2302, Gene Quest), and its integrity was verified on a 0.8% agarose gel. First-strand cDNA was synthesized from 1 μg total RNA using the first-strand cDNA synthesis kit with ReverTra Ace-α-reverse transcriptase (Toyobo Co., Ltd.). The cDNA synthesized above was used as the template to amplify genes using the ORF-specific primers listed in Additional file 1, Table S7, and the PCR products were sequenced at Invitrogen Corporation to confirm their specificity.
Expression of recombinant MtsA
The genomic DNA of S. iniae HD-1 was used as the template to amplify the gene encoding amino acids 27 to 310 of mtsA together with primers 5'-GCGGGATCC GCCTCTAAAGATAAG-3' (underlined nucleotides refer to the Bam HI restriction site-initiation codon) and 5'-GCGCTCGAG TTATTTTGCTAAGCCTTCTGAA-3' (underlined nucleotides refer to the Xho I restriction site-stop codon), which were designed from the sequenced mtsA gene. The protein from this cloned amino acid sequence lacks the presumed signal sequence (amino acids 1 to 26). The cloned amino acid fragment was sequenced by Invitrogen Corporation to rule out the possibility of spurious mutations. Recombinant MtsA was purified from E. coli BL21 (DE3) under native conditions using nickel-nitrilotriacetic acid (Ni-NTA) columns (Qiangen, USA) as recommended by the manufacturer. The protein purified by this protocol was free of contaminating proteins, as assessed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). It was quantified by the Bradford assay (CE2302, Gene Quest) using BSA (0.5 mg ml-1) as the standard. Specific fractions were then pooled.
Preparation of anti-MtsA antibodies
Anti-sera against histidine-tagged MtsA were prepared in male New Zealand white rabbits (2.2 kg), and approval from the Animal Ethics Committee of Life Sciences Institute was obtained prior to using the animals for research. The experiments were performed as stipulated by the China State Science and Technology Commission . Rabbits were purchased from Guangdong Laboratory Animals Research Center and acclimatized for 2 weeks in the laboratory of the Life Science Institute prior to use. The rabbits were maintained at the SPF animal center and fed twice daily. They were immunized with 850 μg purified MtsA in 100 μl complete Freund adjuvant (Sigma-Aldrich, Inc.) and then boosted with 170 μg MtsA in 100 μl incomplete Freund adjuvant (Sigma-Aldrich, Inc.) three times at an interval of 15 days. The sera were collected 1 day before the first immunization and 7 days after each booster dose. Purified MtsA and collected sera were used to determine the rabbit anti-MtsA antibody titer by the dot blotting assay.
Extraction of the S. iniae HD-1 lipoprotein
TritonX-114 was used to extract the S. iniae HD-1 lipoprotein, according to the method modified by Cockayne et al[48, 49]. Briefly, S. iniae HD-1 cells were cultured, harvested, suspended, and sonicated. Next, 100 μl of 10% TritonX-114 in PBS was added to 2 ml of HD-1 cells lysate and incubated at 4°C for 2 h. After centrifugation at 13,000 × g for 10 min, the supernatant was transferred to a fresh tube and incubated at 37°C for 30 min to allow phase separation. The detergent layer was retained after centrifugation at 13,000 × g for 10 min at room temperature, washed with 1 ml PBS at 4°C for 1 h, and separated from the aqueous phase after incubation at 37°C . The detergent layer was diluted 1:1 with water, and analyzed by western blotting using the rabbits anti-MtsA antibodies.
Preparation of MtsA cellular fractions
To determine the subcellular localization of MtsA in S. iniae HD-1, the cellular fractions were subjected to two different treatments. In the first treatment procedure, S. iniae HD-1 cells were cultured overnight in 50 ml BHI, harvested, and resuspended in one-tenth volume of Tris buffer (1 M, pH 7.4), and disrupted by sonication (300 W, 5 min). After removing unbroken cells by centrifugation at 10,000 × g, the crude cell lysate was further centrifuged at 248,000 × g for 1 h (Optima™L-100XP ultracentrifuge, Beckman Coulter). The supernatant and pellet were used as the soluble and particulate fractions of S. iniae cells, respectively . In the second treatment procedure, the cellular fractions were obtained from S. iniae HD-1 by centrifugation using the protocol of Homonylo-McGavin & Lee [52, 53]. Briefly, S. iniae HD-1 cells were grown overnight in 30 ml BHI and then washed by centrifugation at 4°C in a buffer composed of ice-cold 20 mM Tris and 1 mM MgCl2 (pH 7.0). The cell pellets were resuspended and incubated for 90 min in 0.3 ml of protoplast buffer (150 μl 60% raffinose (Beijing Newprobe Biotechnology Co., Ltd.), 15 μl 1 M Tris (pH 7.4), 6 μl 100 mM phenyl-methyl sulfonyl fluoride (MBchem, Inc.), 3 μl 1 M MgCl2, 15 μl 25,000 U ml-1 mutanolysin (Sigma-Aldrich, Inc.), 15 μl 270,000 U ml-1 lysozyme, and 96 μl ddH2O). The cell wall extracts were separated from the spheroplasts by centrifugation at 10,000 × g for 10 min. The pelleted protoplasts were washed, suspended in 2 ml PBS-sucrose buffer, and disrupted by sonication, as described above. The supernatant and pellet obtained after centrifugation at 248,000 × g for 1 h were used as the soluble and particulate fractions of the protoplasts, respectively. All cellular fractions were analyzed by western blotting using the rabbit anti-MtsA antibodies.
Detection of the heme-binding activity of MtsA
The pyridine hemochrome assay  was used to analyze heme binding to MtsA. Purified MtsA in 750 μl of 10 mM Tris-HCl (pH 8.0) was mixed with 170 μl of pyridine (Sigma-Aldrich, Inc.), 75 μl of 1 N NaOH, and 2 mg of sodium hydrosulfite (Beijing Newprobe Biotechnology Co., Ltd.), and heme content was determined by measuring the absorbance (■, black square) at 418 nm with a UV-visible spectrophotometer (Uvmini-1240, Shimadzu). Purified catalase-peroxidase (KatG, Beijing Newprobe Biotechnology Co., Ltd.), a known heme-containing protein, was used as the positive control (Δ, white triangle) .
Measurement of iron in MtsA by ICP-AES
The levels of Fe, Zn, Ca, Mg, and Mn in purified MtsA were determined by inductively coupled plasma-atomic emission spectrometry (ICP-AES) using an IRIS (HR) ICP-AES instrument . Briefly, 0.1 g purified MtsA was immersed in 15 ml nitric acid in an electric cooker. After 3 h nitrification, 1 ml perchloric acid was added and treated for 1 h. The liquid was filter sterilized and analyzed by ICP-AES. A sample lacking purified MtsA was used as the negative control. To achieve contamination-deprivation conditions, all utensils were soaked overnight in nitric acid, and rinsed 6 times with ddH2O.
Detection of anti-MtsA antibodies in sera from Kunming mice that were experimentally infected with S. iniae HD-1
To detect the presence of specific anti-MtsA antibodies in the sera from Kunming mice, 10 male Kunming mice (20 ± 2 g) were purchased from Guangdong Laboratory Animals Research Center, and approval from the Animal Ethics Committee of Life Sciences Institute was obtained prior to using the animals for research. The experiments were performed as stipulated by the China State Science and Technology Commission . Mice were acclimatized at the SPF animal center and fed twice daily for 2 weeks in the laboratory of the Life Science Institute prior to use. Each mouse was injected with 100 μl of 6.2 × 108 CFU ml-1S. iniae HD-1 cells, and the infected sera were collected 10 days post infection. The infected sera and purified MtsA were used in dot-blot and western-blot assays. The sera from 10 Kunming mice injected with PBS were used as the negative control.
The nucleotide and deduced amino acid homology analysis of mtsABC was carried out by ClustalX 1.83 and NCBI BLAST http://blast.ncbi.nlm.nih.gov/Blast.cgi. The presumed signal sequence was predicted by the signalP 3.0 Server http://www.cbs.dtu.dk/services/SignalP/. The theoretical pI/MW was analyzed by the ExPASy Compute pI/MW tool http://www.expasy.org/tools/pi_tool.html. The main domains of mtsABC were detected by the SMART software http://smart.embl-heidelberg.de/. The amino acid sequences were aligned using the SECentral Align Multi 4 program. To determine whether mtsABC is a Lipoprotein, its sequence was assessed by the ScanProsite analysis software http://www.expasy.ch/tools/scanprosite/. All statistical analyses were performed using the SPSS 16.0 software (SPSS Inc., USA).
Project support was provided in parts by grants from Key Projects in the National Science & Technology Pillar Program in the Eleventh Five-year Plan Period (2007BAD29B05) to Dr. An-Xing Li. Project support was provided in parts by grants from Chongqing Engineering Technology Research Centre of Veterinary Drug (CSTC, 2009CB1010) to Dr. Lili Zou.
We thank Prof. Shaoping Weng and Drs. Lichao Huang, Xiangyun Wu, Yangsheng Wu, Jianfeng Yuan, and Suming Zhou for their helpful technical advice. We also thank Dr. Shenquan Liao for providing plasmid pet-32a-c (+) used in this study, and the professional copyediting service from the International Science Editing.
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