Candida albicans SUR7 contributes to secretion, biofilm formation, and macrophage killing
© Bernardo and Lee; licensee BioMed Central Ltd. 2010
Received: 24 February 2009
Accepted: 30 April 2010
Published: 30 April 2010
Candida albicans SUR7 has been shown to be required for plasma membrane organization and cell wall synthesis, but its role in virulence is not known. Using a bioinformatics strategy, we previously identified several novel putative secretion pathway proteins potentially involved in virulence, including the C. albicans homolog of the Saccharomyces cerevisiae endocytosis-related protein Sur7p. We therefore generated a C. albicans sur7 Δ null mutant and examined its contribution to key virulence attributes.
Structurally, the C. albicans sur7 Δ mutant was impaired in response to filamentation-inducing conditions, and formed aberrant hyphae with extensive accumulation of plasma membrane-derived structures within the cell. Absence of SUR7 resulted in a temperature-sensitive growth defect at high temperatures (42°C), which was partially rescued by addition of NaCl. We next examined the role of the SUR7 paralog C. albicans FMP45 in this temperature-sensitive phenotype. Analysis of C. albicans Fmp45p-GFP demonstrated co-localization of Fmp45p with Sur7p and increased fluorescence in the plasma membrane in the presence of high salt. We next focused on key virulence-related phenotypes. The C. albicans sur7 Δ null mutant exhibited secretory defects: reduced lipase secretion, and increased levels of secreted Sap2p. The null mutant was hyper-susceptible to sub-inhibitory concentrations of caspofungin, but not amphotericin B and 5-fluorocytosine. Functionally, the sur7 Δ mutant demonstrated increased adhesion to polystyrene and of note, was markedly defective in biofilm formation. In an in vitro macrophage model of virulence, the sur7 Δ mutant was impaired in macrophage killing.
Plasma membrane and cell wall organization are important for cell morphology, and alterations of these structures contributed to impairment of several key virulence-associated phenotypes in the C. albicans sur7 Δ mutant.
C. albicans SUR7 shares 44% identity and 65% similarity with S. cerevisiae SUR7. S. cerevisiae SUR7 encodes a predicted integral membrane protein with an N-terminal signal sequence and four transmembrane domains, and is a member of a family of proteins that also includes Yn1194p, Ydl222p, and Ylr414cp [1, 2]. Sur7p localizes to large, immobile, stable cortical patches on the plasma membrane, termed "eisosomes" which mark sites of endocytosis [3, 4]. Deletion of S. cerevisiae SUR7 resulted in a strain with a defect in sporulation and altered plasma membrane sphingolipid content .
Alvarez and Konopka  identified C. albicans Sur7p in a detergent-resistant fraction of the plasma membrane in a proteomics study on N-acetylglucosamine-induced proteins. Recently, they generated a C. albicans sur7 Δ knockout mutant which is characterized by aberrant cell wall organization . Specifically, lack of SUR7 in C. albicans results in mislocalization of actin and septin, and abnormal cell wall material protruding into and forming structures within the cytoplasm. However, from a phenotypic standpoint, little is known regarding the role of C. albicans SUR7 in pathogenesis.
A number of C. albicans virulence-related secreted proteins that remain associated with the plasma membrane or cell wall have been identified, including the outer mannoprotein Hwp1p , adhesins encoded by the ALS family of genes , and membrane proteins encoded by the pH-responsive genes PHR1 and PHR2[8–11]. However, a genome-wide understanding of Candida secretory pathway proteins and virulence is still limited. Previously, we took advantage of SignalP v2.0 [12, 13] and a series of additional validated predictive algorithms to define a computational secretome of C. albicans from its entire genome . In addition to identifying putative soluble secretory proteins, we also identified a number of putative and known membrane and cell-wall associated proteins . We next compared these databases with published genome-wide expression profiling data to identify candidate virulence-related genes. Fradin et al.  performed genomic expression profiling in C. albicans exposed in vitro to blood and in vivo during infection in a standard mouse model of disseminated candidiasis and identified groups of genes highly expressed under these conditions. When compared with the dataset of predicted secretion pathway ORFs, a number of virulence-related genes were concordant, including Hwp1p and the Als family of adhesins [6, 7], Phr1p , Sap9p , Sod5p [17, 18], and Sun41p [19–21]. Thus, we identified known soluble secreted and membrane-associated secretion pathway proteins important for virulence, supporting our approach as a method to identify candidate virulence-related genes.
We also identified orf19.3414, which is predicted to encode a secretion pathway protein homologous to the S. cerevisiae endocytosis-related gene SUR7. As we independently identified C. albicans SUR7 in our screen for candidate virulence-related genes, we used a reverse genetic approach to investigate the role of C. albicans SUR7 in attributes related to virulence in order to define its role in pathogenesis.
The temperature sensitive growth defect of the Candida albicans sur7 Δ mutant is partially rescued by high salt
Candida albicans strains used in this study.
ura3 Δ::λimm434/ura3 Δ::λimm434 his1::hisG/HIS1::his1::hisG arg4::hisG/ARG4::URA3::arg4::hisG SUR7/SUR7
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ SUR7/SUR7 FMP45/FM45
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ SUR7/sur7 Δ::dpl200-URA3-dpl200
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ sur7 Δ::dpl200-URA3-dpl200/sur7 Δ::ARG4
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ HIS1
sur7 Δ::dpl200-URA3-dpl200/sur7 Δ:: ARG4
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 ΔHIS1::SUR7
sur7 Δ::dpl200-URA3-dpl200/sur7 Δ:: ARG4
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ SUR7/SUR7 FMP45/FM45-GFP-HIS1
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ FMP45/FM45-GFP-HIS1 sur7 Δ::dpl200-URA3-dpl200/sur7 Δ:: ARG4
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ FMP45/FM45 SUR7/SUR7-YFP-HIS1
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ FMP45/FM45 SUR7/SUR7-GFP-HIS1
ura3 Δ/ura3 Δ arg4 Δ/arg4 Δ his Δ/his1 Δ SUR7/SUR7-YFP-HIS1 FMP45/FM45-GFP-URA3
Calculated doubling times of C. albicans strains under different conditions of growth.
Doubling time of each strain (hours)
sur7 Δ + SUR7
30°C, CSM (p > 0.05)
2.244 ± 0.070
2.199 ± 0.016
2.168 ± 0.034
42°C, CSM (*p < 0.0001)
3.645 ± 0.066
11.08 ± 0.122 *
3.560 ± 0.055
42°C, CSM + 1 M NaCl (*p < 0.001)
3.145 ± 0.119
3.374 ± 0.072 *
3.000 ± 0.036
C. albicans Fmp45p-GFP fluorescence intensity increases in the presence of high salt and temperature
To test this hypothesis, we created strains B-FMP45gfp and sΔ-FMP45gfp expressing the Fmp45p-GFP fusion protein in both wild-type and sur7 Δ null backgrounds, respectively (Table 1). In the wild-type background, Fmp45p-GFP fluorescence intensity is very low, and appears to display a punctate pattern of plasma membrane localization (Fig. 2B, panel I). In the presence of high salt, Fmp45p fluorescence intensity in the SUR7+ background is increased (Fig. 2B, panel III). In the sur7 Δ null background, the fluorescence pattern of Fmp45p-GFP is clearly punctate, similar to the localization of Sur7p, and in the absence of salt an increase in Fmp45p-GFP fluorescence is readily observed (Fig. 2B, panel II). In the presence of high salt (1.0 M NaCl), Fmp45p-GFP fluorescence greatly increased in the sur7 Δ background and maintained the punctate pattern that is typical of Sur7p localization (Fig. 2B, panel IV). Using Image J software analysis, we quantified the relative fluorescence intensity of all major points around a given cell. The median intensity of each cell with a wild-type (without and with salt) and sur7 Δ null (without and with salt) background was 212, 279, 491, and 1040, respectively. These measurements are in agreement with visual observation of the images obtained (Fig. 2B). The co-localization of Fmp45p and Sur7p and the increase in fluorescence intensity of Fmp45p-GFP in the presence of 1 M NaCl together suggest that Fmp45p may play a role in tolerance of high salt in the absence of C. albicans Sur7p.
The Candida albicans sur7 Δ mutant is defective in tolerance to cell wall stress and antifungal agents targeting cell wall components
Taken together, these initial studies on the sur7 Δ mutant indicate an overall defect in cell wall structure, and consequent defects in the ability of the sur7 Δ mutant to tolerate specific stresses related to cell wall function. We next focused on studying the implications of this defective structure on factors that contribute to virulence, including adhesion, filamentation, protease secretion, and biofilm formation.
The C. albicans sur7 Δ mutant has an abnormal response to induction of filamentation and hyphal cells are markedly defective in plasma membrane structure
C. albicans sur7 Δ mutant hyphal cells are defective in endocytosis
Thus, from a structural perspective, the overall plasma membrane architecture of both yeast and hyphal cells, the C. albicans sur7 Δ null mutant is markedly abnormal.
The Candida albicans sur7 Δ mutant is impaired in lipase secretion but overproduces Sap2p
Absence of C. albicans SUR7 increases adherence
Adhesion of C. albicans strains to polystyrene.
Relative adherence units
sur7 Δ + SUR7
0.798 ± 0.024
1.310 ± 0.035
0.801 ± 0.012
0.621 ± 0.006
0.776 ± 0.007
The C. albicans sur7 Δ mutant forms an aberrant biofilm
Next, in order to determine if the reduced biofilm mass of the sur7 Δ mutant is related to decreased attachment of the biofilm, we quantified the amount of planktonic cells in the biofilm wash of each strain. Compared to the control strains, there were significantly fewer planktonic cells (colony forming units) present in the biofilm formed by the sur7 Δ null mutant (p < 0.0001; data not shown). These results are therefore consistent with the previous adhesion studies. Thus, reduced attachment of cells does not account for the lesser biofilm mass of the sur7 Δ null mutant. Furthermore, as there is only a minor delay or impairment in filamentation in this growth medium, it appears that the defect in biofilm formation is most likely due to a defect in cell wall or plasma membrane structure related to the absence of SUR7.
The C. albicans sur7 Δ mutant is defective in macrophage killing
Using a bioinformatics approach, we previously identified predicted secretion pathway proteins in Candida albicans and next compared this with published transcriptional profiling data to identify genes highly expressed during conditions similar to bloodstream infection . This approach identified a number of genes known to be involved in pathogenesis, among them SUN41 and SOD5, which have recently been studied in detail [17–21]. Among several other unknown open reading frames, we identified the C. albicans homolog of S. cerevisiae SUR7, which has recently been described in C. albicans as required for proper plasma membrane organization and cell wall synthesis . Thus, we sought to investigate the role of C. albicans SUR7 in virulence-related phenotypes, including filamentation, aspartyl protease (Sap) and lipase secretion, biofilm formation, and virulence using an in vitro macrophage killing model.
We first assessed the structural role of C. albicans SUR7 from a general cellular and physiologic perspective. Loss-of-function of SUR7 resulted in the formation of aberrant plasma membrane invaginations and accumulation of subcellular structures inside the C. albicans cells, whether in the hyphal or the yeast form. Similar invaginations were observed in a S. cerevisiae pil1 Δ deletion mutant , and S. cerevisiae Pil1p has been shown to be involved in the localization of S. cerevisiae Sur7p to the plasma membrane. In addition, the C. albicans sur7 Δ mutant was hyper-susceptible to sub-inhibitory concentrations of caspofungin but not to either amphotericin B or 5-fluorocytosine. Caspofungin inhibits β-1,3-glucan synthase thus altering cell wall composition leading to cell lysis of Candida cells . Moreover, we have demonstrated that growth of the sur7 Δ null mutant was sensitive to SDS, Congo Red, and Calcofluor White. These results suggest that SUR7 plays a role in maintenance of cell wall integrity of both the yeast and filamentous form of C. albicans.
There was no impairment in the ability of the sur7 Δ null mutant strain to tolerate general osmotic stresses or growth at 37°C. Likewise, in S. cerevisiae, the growth of the sur7 Δ mutant, and null mutants of the SUR7 paralogs ynl194 Δ and ydl222 Δ strains was similar to wild-type under conditions of high salt or elevated temperatures . However, growth of the C. albicans sur7 Δ mutant was markedly impaired at 42°C, a phenotype that was partially rescued by the addition of 1.0 M NaCl. We demonstrated that the fluorescently-tagged C. albicans Sur7p paralog Fmp45p co-localizes with Sur7p-GFP. We further demonstrated increased fluorescence intensity of the C. albicans Sur7p paralog Fmp45p, in the presence of high salt (1.0 M NaCl) in both the SUR7+ and SUR7- strains. Thus the cellular localization and increased fluorescence intensities suggest that Fmp45p may play a role in survival at high temperature and salt conditions in the sur7 Δ mutant. This suggests functional similarities between SUR7 and FMP45 that are important for growth and survival in more extreme environmental conditions. We have so far been unsuccessful in our efforts to generate a C. albicans sur7 Δ fmp45 Δ null mutant, and it remains to be determined if these genes are synthetic lethal in C. albicans.
There is limited data on the role of endocytosis in Candida pathogenesis. Previously, C. albicans ORFs homologous to S. cerevisiae endocytosis genes were investigated for their involvement in polarized cell growth . Specifically, the authors examined ABP1, BZZ1, EDE1, and PAN1, whose gene products are involved in the early stages of endocytosis . Loss of function of PAN1, but not ABP1, BZZ1, or EDE1, resulted in altered hyphal formation . More recently, Douglas et al  investigated the role of C. albicans RVS161 and RVS167 whose homologues in S. cerevisiae are involved in the severance of budding endocytic vesicles from the plasma membrane. Deletion of these genes resulted in strains that produced aberrant filamentous structures and exhibited decreased virulence in a mouse model of disseminated candidiasis . In S. cerevisiae, SUR7 localizes to eisosomes which are immobile protein assemblies that mark sites on the plasma membrane for endocytosis . Defective endocytosis as a result of the deletion of SUR7 in C. albicans has been described for the yeast form of this important pathogen . However, the role of C. albicans SUR7 in pathogenesis has not been previously examined. We present here results of experiments whose main focus was to characterize the structural and physiologic role of C. albicans SUR7, in order to provide a foundation to understanding the role of SUR7 in pathogenesis.
Thus, we next turned our attention to assessing the functional contribution of C. albicans SUR7 to several key virulence-related attributes. The C. albicans sur7 Δ mutant was delayed in filamentation when induced on solid media, although this overall defect was minor. Microscopic examination revealed that the sur7 Δ filaments branched extensively, and ultrastructurally contained subcellular structures resembling those seen in the C. albicans sur7 Δ yeast cells. Alvarez et al.  also describe pseudohyphal growth of the sur7 Δ mutant strain including an apparent defect in cell polarization, as evidenced by weak filipin staining. However, it is not clear why C. albicans SUR7 affects Sap or lipase secretion, as there is currently little known of the role of endocytosis in the secretion of Saps, lipases, and phospholipases.
Importantly, the C. albicans sur7 Δ mutant formed a patchy biofilm, with many areas of scant cells and filaments. As we demonstrated an increase in adhesion in the sur7 Δ mutant, and only a minor delay in filamentation, this markedly defective biofilm cannot be attributed to reduced adhesion or defective filamentation. Instead, we postulate that the marked plasma membrane and cell wall defects that we demonstrated in the structural studies of the sur7 Δ mutant may be responsible for this defective biofilm. Biofilm formation is a complex, still incompletely understood process. However, cell-cell communication and adhesion are an important part of biofilm formation. We suspect that the marked derangement in plasma membrane and cell wall organization may affect the ability of the C. albicans sur7 Δ mutant to form a normal biofilm.
Alternatively, it is possible that SUR7 is involved in biofilm detachment, as a negative regulator. Recently, Sellam et al. , performed transcriptional profiling to identify genes potentially involved in biofilm detachment (where cells from a mature biofilm detach in order to spread to distant sites within the bloodstream of an infected host). In their experiments, levels of SUR7 transcript were down-regulated during the initial steps of biofilm detachment. During biofilm detachment, the biofilm was observed to detach from the surface in patches. This is in agreement with the patchy morphology of the biofilm formed by the sur7 Δ homozygous null mutant strain. Thus, we present another hypothesis that SUR7 may be a negative regulator of biofilm detachment, and we are currently investigating the role of SUR7 in biofilm detachment.
We next assayed virulence in a macrophage killing assay in vitro. We clearly demonstrated that the sur7 Δ mutant strain was greatly reduced in its ability to kill murine macrophage cells at 24 hours, which is similar to the virulence defect seen in a C. albicans vps11 Δ mutant . Again, we suspect that the marked abnormalities in plasma membrane and cell wall structure render the C. albicans sur7 Δ mutant more susceptible to macrophage killing.
C. albicans SUR7 shares some functional homology to S. cerevisiae SUR7, but unlike in S. cerevisiae, C. albicans SUR7 may play a role in endocytosis and the maintenance of cell wall integrity. C. albicans SUR7 contributes to several key virulence-related phenotypes, and thus, may have additional molecular functions in this highly adaptable, pathogenic organism. Of note, SUR7 appears to be fungal-specific, with no clear human homologue. Given the phenotypes we describe here and its increased expression during infection , we are further investigating whether C. albicans SUR7 plays a role in biofilm detachment and the dissemination of infection.
Strains and media
C. albicans strains used in this study are indicated in Table 1. Strains were routinely grown at 30 (C in YPD (1% yeast extract, 2% peptone, 2% glucose) supplemented with uridine (80 μg ml-1), or in complete synthetic medium (0.67% yeast nitrogen base without amino acids [YNB], 2% glucose, 0.079% Complete Synthetic Mixture). Filamentation was assayed at 37°C in the following media with agar: Medium 199 containing Earle's salts (Invitrogen) supplemented with L-glutamine and buffered with 150 mM HEPES to pH 7.5; RPMI-1640 supplemented with L-glutamine (US Biological) and buffered with 165 mM MOPS to pH 7.0 (referred to as "RPMI-1640" from this point onward); 10% (v/v) fetal calf serum in YPD; and Spider medium as described by Liu et al . Liquid hyphal-inducing media were inoculated with cells from overnight cultures to achieve a starting density of 5 × 106 cells ml-1, followed by incubation with shaking at 200 rpm at indicated time points, and visualization by microscopy. Solid media were prepared by adding 2% (w/v) agar.
Preparation of plasmid and genomic DNA
Plasmids were expanded in Escherichia coli DH5α competent cells (Invitrogen) grown in LB medium with ampicillin (100 μg ml-1) at 37°C. Plasmid DNA was prepared from E. coli strains using the Fast Plasmid Mini Kit™ (5PRIME) following the manufacturer's instructions. Genomic DNA was extracted from yeast cells using the Masterpure™ Yeast DNA Purification Kit (Epicentre Biotechnologies) according to manufacturer's instructions with the exception of an extended incubation step (1 hr on ice) performed after the addition of the MPC Protein Precipitation Reagent.
Analysis and targeted disruption of C. albicans SUR7
The putative C. albicans SUR7 open reading frame (orf19.3414) was identified in a genome-wide search for proteins that compose predicted C. albicans secretion pathway proteins . The most current annotation of this gene was verified at the Candida Genome Database http://www.candidagenome.org and CandidaDB http://genodb.pasteur.fr/cgi-bin/WebObjects/CandidaDB.
Primer sequences used in this study.
Primer sequence (5' → 3')
To disrupt the second SUR7 allele, selected C. albicans SUR7/sur7Δ ::dpl200-URA3-dpl200 mutants were transformed with the PCR-generated gene disruption cassette, similar to the process of creating the first allele knockout strains, except plasmid pRS-Arg4ΔSpeI  was used as the template. Histidine prototrophy was restored after transforming the resulting strain with Nru I-linearized pGEM-HIS1 .
In order to generate an isogenic SUR7 complemented strain, a copy of wild-type SUR7 was sub-cloned into pGEM-HIS1, digested with Nru I, and transformed into the sur7Δ::URA3/sur7Δ::ARG4 strain. Reverse and forward sequencing of the cloned SUR7 gene was performed, and confirmed that the sequence was identical to the CGD Assembly 21 SUR7 sequence. Correct integration of the wild-type gene was confirmed by allele-specific PCR in multiple independent transformants. Standard methods were used for restriction mapping, subcloning, DNA sequencing, and lithium acetate transformation .
Strain construction was verified by Southern blotting and standard blotting and hybridization techniques . Briefly, genomic DNA digested with Hin d III and Cla I, was run on a 0.8% (w/v) agarose gel. DNA fragments were subsequently transferred by capillary action to a positively charged nylon membrane (Roche Applied Science) using 20× Saline Sodium Citrate buffer. A 1.1 kb DIG-labelled PCR amplicon from C. albicans SUR7 (n.t. -585 to +541 of orf19.3414) was then used to probe the membrane. Detection of Hin d III/Cla I DNA fragments of the expected band sizes for the wild-type allele (SUR7; 3.6 kb), first (sur7 Δ::URA3; 2.5 kb) and second (sur7 Δ::ARG4; 1.4 kb) allele knockout cassettes confirmed the genotype of each strain used in this study (Additional File 1).
Construction and analysis of FMP45-GFP tagged C. albicans strains
Green-fluorescent protein-tagged (GFP) strains of C. albicans FMP45 (orf19.6489) were generated using PCR-mediated insertion of GFP according to published methods, using primers FMP45-5FP and FMP45-3HisR2 and plasmid pMG1646 (pGFP-HIS1) as a template . This method allows for genomic integration of GFP-coding sequences at the C-terminus of the protein of interest while maintaining control of expression of the fusion protein under its native promoter. Transformants were selected on medium lacking histidine, and confirmation of correct integration into strains BWP17 (SUR7/SUR7) and SMB3 (sur7 Δ/sur7 Δ) was performed by allele-specific PCR on genomic DNA extracted from independent transformants. Localization of Fmp45p-GFP was performed using laser scanning confocal microscopy of live cells grown in complete synthetic medium in the presence or absence of 1.0 M NaCl at 42°C. Images were acquired on the Zeiss LSM700 on an Axio Observer Z1 (Carl Zeiss MicroImaging Inc). Image J software (National Institutes of Health; http://rsb.info.nih.gov/ij) was used to quantify fluorescence intensity of representative cells using the Plot Profile function. Median fluorescence intensity indicates the overall fluorescence intensity of a representative cell.
Additionally, a double fluorescent tagged strain was constructed to study the cellular localization of Fmp45p with respect to Sur7p localization. First we created a SUR7-YFP strain as described in the previous paragraph except that the PCR amplicon used was generated using pMG1656 (pYFP-HIS)  and primers SUR7-5FP and SUR7-3HisR2 (Table 4). The resulting strain was next transformed with PCR amplicons generated using primers FMP45-5FP and FMP45-3UraR1 and pMG1602 (pGFP-URA)  and transformants were selected on medium lacking uracil and uridine. An additional control strain, SUR7-GFP, was also created using pMG1646 (pGFP-HIS) as a template  and primers SUR7-5FP and SUR7-3HisR2. Correct integration of the SUR7-YFP, SUR7-GFP, and FMP45-GFP alleles were verified by allele-specific PCR on genomic DNA extracted from independent transformants, using primer pairs SUR7FP-5Det and ADHTERAS; and FMP45FP-5Det and 3FP-URADet, respectively. Images were acquired on a Zeiss Axioskop 2MOT microscope using the Nuance™ Multispectral Imaging System (CRi). Using the microscope's green fluorescence filter set (Ex: 475/28 nm; Em: 515 nm LP; Single-band dichroic: 519 nm), a series of images (spectral cube) was acquired at 10 nm intervals from 500 - 720 nm as defined by the Nuance™ system's liquid crystal tunable filter. Spectral cube images were acquired from control strains: auto-fluorescence (DAY185), YFP only (SUR7-YFP), and GFP only (SUR7-GFP), as well as from the SUR7-YFP FMP45-GFP multiply-expressing strain. Using Nuance software, pure spectra were generated for autofluorescence, GFP and YFP which were subsequently used to unmix spectral cubes acquired of the SUR7-YFP FMP45-GFP strain. Following linear unmixing, the individual fluorophore-tagged proteins were viewed in separate component images, with the extent of GFP-YFP co-localization indicated in a merged image. Although there is significant overlap of the fluorescence emission spectra of GFP and YFP that cannot be distinguished using conventional epifluorescence imaging, acquisition and unmixing of spectral images using the Nuance™ spectral imaging camera allowed these spectrally distinct fluorophores to be individually detected. Details of strains and primers used in this study are found in Tables 1 and 4.
Analysis of growth and stress tolerance
Growth was assessed in liquid media by measuring OD600 at fixed intervals in an automated Bioscreen C Analyzer (Thermo Labsystems) as described previously . Growth curves were generated using Prism 5.0 (GraphPad Software, Inc). Strains were analyzed in conditions of high osmolar stress (2.5 M glycerol or 1.0 M NaCl) and varying temperatures (30, 37, or 42°C). Strains grown in complete synthetic medium supplemented with uridine were also exposed to sub-inhibitory concentrations of caspofungin, amphotericin B, and 5-fluorocytosine. Pilot growth curves were first generated to determine the working concentration of each antifungal reagent to be used. The final concentrations of caspofungin, amphotericin B, and 5-fluorocytosine used for phenotypic analysis were 0.25, 0.5, and 10 μg ml-1, respectively. Cell wall integrity was tested on YPD agar medium containing Calcofluor White (20, 50, and 125 μg ml-1), caspofungin (0.1, 0.2, and 0.5 μg ml-1), Congo Red (50, 100, and 200 μg ml-1), or SDS (0.01%, 0.02%, and 0.05%).
Endocytosis assay and visualization of vacuolar morphology
The effect of the loss of function of SUR7 on endocytosis in both the yeast and filamentous forms was assessed by following the fate of the lypophilic dye FM4-64 . For dual staining with carboxy-DCFDA (CDCFDA; Invitrogen), cells were first stained with FM4-64. Next, 1.0 × 106 cells ml-1 were resuspended in 50 mM sodium citrate buffer and CDCFDA was added according to the manufacturer's instructions. Following a 15 minute incubation period at room temperature, microscopy then was performed on a Nikon Eclipse 80i fluorescent microscope (Nikon Instruments, Inc.). Images were acquired and color added using NIS-Elements Documentation software, version 2.34 (Nikon Instruments, Inc.).
Extracellular protease secretion was assayed on BSA plates . Lipase activity was visualized on egg-yolk agar plates and YNB agar containing 2.5% (v/v) Tween 80 . BSA degradation in liquid media was assessed by SDS-PAGE, followed by analysis of Sap2p secretion by Western blot analysis as described , except that the medium used was 1.18% Yeast Carbon Base (YCB, Difco™), 0.01% yeast extract, and 0.1% BSA. Equivolumes of culture supernatants were loaded from each strain, using the same concentration of cells for each strain. Saps 4-6p were induced by growing strains, at a starting concentration of 5 × 106 cells ml-1 in RPMI-1640, at 37°C for 24 h with shaking at 200 rpm. Saps 4-6p secreted into the media were analyzed by Western blot using anti-Sap5p polyclonal antibody (from M. Monod), after transferring to PVDF membrane (Bio-Rad), and detection using chemiluminescence (ECL Plus Detection Kit, GE Healthcare Life Sciences) and autoradiography.
Adhesion to polystyrene was assessed as described previously  with slight modifications. An inoculum of 1.0 × 107 cells ml-1 in PBS or RPMI-1640 was prepared, of which 150 μl was added to individual wells of a 96-well microtiter plate. An identical set of each strain was dispensed into individual microcentrifuge tubes for use as the unwashed control, representing the total number of adherent and non-adherent cells. Following a 2-hr incubation period at 37°C, non-adherent cells were removed by washing the wells of the microtiter plate, while cells incubated in microcentrifuge tubes were pelleted at high speed on a benchtop centrifuge. The XTT-reduction assay  was then used to quantify the adhered and total amount of cells in each well and microcentrifuge tube, respectively. After incubation with the XTT-menadione substrate at 37°C for 3 hours, 75 μl of colored formazan was transferred to a fresh microtiter plate and absorbance was read at 490 nm. The adherence capacity of each strain was calculated as the mean XTT-value of the washed cells relative to the mean XTT-value of the unwashed cells. Experiments were performed at least twice, each with 8 replicates per strain tested. Statistical significance was assessed with an analysis of variance (ANOVA) between all strains compared using Prism 5.0 (GraphPad Software, Inc.)
Analysis of fungal biofilms
Formation of C. albicans biofilms and the XTT-reduction assay were performed as previously described . As an alternative, Crystal Violet staining was used to estimate the biofilm mass . Briefly, biofilms were stained with 100 μl of a 0.3% (w/v) Crystal Violet, 5% (v/v) isopropanol, 5% (v/v) methanol solution for 5 min, after which the wells were washed with water. The dye was then extracted from the biofilms using 100 μl ethanol, of which 75 μl was transferred to a clean microtiter plate and the absorbance was measured spectrophotometrically at 550 nm. Scanning electron microscopy was performed on biofilm samples formed on a coverslip (Thermanox, Nalge Nunc International) after 24 h incubation of a 0.5 ml inoculum containing 1.0 × 106 cells ml-1 according to previously described methods . Non-adherent, planktonic cells were quantified from biofilm washes by plating serial dilutions of the pooled washes, from individual replicates, onto YPD agar plates, and colony forming units were determined following incubation at 30°C for 2 days.
Macrophage killing assays
The macrophage killing assay was performed as described by Palmer et al. . The murine macrophage cell line used in this study, J774A.1, was purchased from ATCC and propagated in high glucose D-MEM supplemented with 10% FCS. Next, 2.0 × 105 J774A.1 cells in a volume of 0.75 ml were seeded in Lab-Tek Chambered Slides (Nalge-Nunc), incubated overnight at 37°C with 5% CO2. C. albicans strains, diluted and grown as previously described , were co-incubated with the adhered macrophage at a multiplicity of infection (MOI) of 2, for a specified period of time. Following co-incubation, the cells were washed twice with phosphate-buffered saline (PBS) and viability was assessed using 0.2 μM calcein AM and 4 μM ethidium bromide homodimer (LIVE/DEAD Viability/Cytotoxicity kit, Invitrogen) according to the manufacturer's instructions. Live macrophages from four fields of each chamber were counted and statistical differences between the average values was assessed using ANOVA followed by Tukey's multiple comparison of means.
SAL is a physician-scientist (MD, Ph.D) who is the Chief of Infectious Diseases at the New Mexico VA Healthcare System, and Assistant Professor at the School of Medicine of the University of New Mexico (Albuquerque, NM).
We thank Aaron P. Mitchell (Carnegie Mellon University) for providing strain BWP17 and plasmids pDDB57, pRS-ARG4ΔSpeI, and pGEM-HIS1. We thank Maryam Gerami-Nejad and Cheryl Gale (University of Minnesota) for providing plasmids pMG1646, pMG1602, and pGM1656. We thank the Zeiss Campus Workshop (Carl Zeiss MicroImaging Inc) for assistance with the confocal fluorescence imaging and helpful advice. We thank Rebecca Lee at the University of New Mexico Cancer Center Fluorescence Microscopy Facility (supported as detailed on the webpage: http://hsc.unm.edu/crtc/microscopy/index.shtml) for the expert advice and technical support with the Nuance™ Multispectral Imaging System. We thank Barbara Hunter (University of Texas Health Science Center at San Antonio) for assistance with scanning and transmission electron microscopy.
This work was supported in part by grants from the Department of Veterans' Affairs (MERIT Award to SAL), the NIDCR, Grant #DE14318 for the UTHSCSA CO ★ STAR Program (SMB) and the Biomedical Research Institute of New Mexico (SAL).
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