Tulumoğlu Ş, Kaya Hİ, Şimşek Ö. Probiotic characteristics of Lactobacillus fermentum strains isolated from tulum cheese. Anaerobe. 2014;30C:120–5.
Article
Google Scholar
Swain MR, Anandharaj M, Ray RC, Parveen Rani R. Fermented fruits and vegetables of Asia: a potential source of probiotics. Biotechnol Res Int. 2014;2014:250424.
Article
PubMed
PubMed Central
Google Scholar
Abdelgadira WS, Hamadb SH, Moller PL, Jakobsen M. Characterization of the dominant microbiota of Sudanese fermented milk Rob. Int Dairy J. 2001;11:63–70.
Article
Google Scholar
Dan T, Fukuda K, Sugai-Bannai M, Takakuwa N, Motoshima H, Urashima T. Characterization and expression analysis of the exopolysaccharide gene cluster in Lactobacillus fermentum TDS030603. Biosci, Biotechnol, Biochem. 2009;73(12):2656–64.
Article
CAS
Google Scholar
Dellaglio F, Torriani S, Felis GE. Reclassification of Lactobacillus cellobiosus Rogosa et al. 1953 as a later synonym of Lactobacillus fermentum Beijerinck. Int J Syst Evol Microbiol 2004. 1901;54(3):809–12.
Article
Google Scholar
Gil-Campos M, López MÁ, Rodriguez-Benítez MV, Romero J, Roncero I, Linares MD, et al. Lactobacillus fermentum CECT 5716 is safe and well tolerated in infants of 1–6 months of age: a randomized controlled trial. Pharmacol Res. 2012;65(2):231–8.
Article
PubMed
Google Scholar
Fazeli MR, Shahverdi AR, Sedaghat B, Amalifar H, Samadi N. Sourdough-isolated Lactobacillus fermentum as a potent anti-mould preservative of a traditional Iranian bread. Eur Food Res Technol. 2004;218:554–6.
Article
CAS
Google Scholar
Morita H, Yoshikawa H, Sakata R, Nagata Y, Tanaka H. Synthesis of nitric oxide from the two equivalent guanidino nitrogens of L-arginine by Lactobacillus fermentum. J Bacteriol. 1997;179(24):7812–5.
CAS
PubMed
PubMed Central
Google Scholar
Beijerink MW. Sur les ferments lactiques de l’industrie. Arch Ne’erl Sci Exactes Nat Se’rie II. 1901;7:212–43.
Google Scholar
Stiles ME, Holzapfel WH. Lactic acid bacteria of foods and their current taxonomy. Int J Food Microbiol. 1997;36(1):1–29.
Article
CAS
PubMed
Google Scholar
Rogosa M, Wiseman RF, Mitchell JA, Disraely MN, Beaman AJ. Species differentiation of oral lactobacilli from man including description of Lactobacillus salivarius nov spec and Lactobacillus cellobiosus nov spec. J Bacteriol. 1953;65(6):681–99.
CAS
PubMed
PubMed Central
Google Scholar
Vescovo M, Dellaglio F, Bottazzi V, Sarra PG. Deoxyribonucleic acid homology among Lactobacillus species of the subgenus Betabacterium Orla-Jensen. Microbiologica. 1979;2:317–30.
CAS
Google Scholar
Collins MD, Rodrigues UM, Ash C, Aguirre M, Farrow JAE, Martinez-Murcia A, et al. Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol Lett. 1991;77:5–12.
Article
CAS
Google Scholar
Gardiner GE, Heinemann C, Bruce AW, Beuerman D, Reid G. Persistence of Lactobacillus fermentum RC-14 and Lactobacillus rhamnosus GR-1 but not L. rhamnosus GG in the human vagina as demonstrated by randomly amplified polymorphic DNA. Clin Diagn Lab Immunol. 2002;9(1):92–6.
CAS
PubMed
PubMed Central
Google Scholar
Nigatu A, Ahrné S, Molin G. Randomly amplified polymorphic DNA (RAPD) profiles for the distinction of Lactobacillus species. Antonie Van Leeuwenhoek. 2001;79(1):1–6.
Article
CAS
PubMed
Google Scholar
Rodas AM, Ferrer S, Pardo I. Polyphasic study of wine Lactobacillus strains: taxonomic implications. Int J Syst Evol Microbiol. 2005;55(1):197–207.
Article
CAS
PubMed
Google Scholar
Gosiewski T, Chmielarczyk A, Strus M, Brzychczy-Włoch M, Heczko PB. The application of genetics methods to differentiation of three Lactobacillus species of human origin. Ann Microbiol. 2012;62(4):1437–45.
Article
CAS
PubMed
Google Scholar
Vandamme P, Pot B, Gillis M, De Vos P, Kersters K, Swings J. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev. 1996;60(2):407–38.
CAS
PubMed
PubMed Central
Google Scholar
Bain JM, Tavanti A, Davidson AD, Jacobsen MD, Shaw D, Gow NA, et al. Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus. J Clin Microbiol. 2007;45(5):1469–77.
Article
CAS
PubMed
PubMed Central
Google Scholar
Maiden MC, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, et al. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A. 1998;95(6):3140–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Feil EJ, Enright MC. Analyses of clonality and the evolution of bacterial pathogens. Curr Opin Microbiol. 2004;7(3):308–13.
Article
CAS
PubMed
Google Scholar
Oh PL, Benson AK, Peterson DA, Patil PB, Moriyama EN, Roos S, et al. Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution. ISME J. 2010;4(3):377–87.
Article
PubMed
Google Scholar
Cai H, Rodriguez BT, Zhang W, Broadbent JR, Steele JL. Genotypic and phenotypic characterization of Lactobacillus casei strains isolated from different ecological niches suggests frequent recombination and niche specificity. Microbiology. 2007;153(8):2655–65.
Article
CAS
PubMed
Google Scholar
Diancourt L, Passet V, Chervaux C, Garault P, Smokvina T, Brisse S. Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination. Appl Environ Microbiol. 2007;73(20):6601–11.
Article
CAS
PubMed
PubMed Central
Google Scholar
de Las RB, Marcobal A, Muñoz R. Development of a multilocus sequence typing method for analysis of Lactobacillus plantarum strains. Microbiology. 2006;152(1):85–93.
Article
Google Scholar
Picozzi C, Bonacina G, Vigentini I, Foschino R. Genetic diversity in Italian Lactobacillus sanfranciscensis strains assessed by multilocus sequence typing and pulsed-field gel electrophoresis analyses. Microbiology. 2010;156:2035–45.
Article
CAS
PubMed
Google Scholar
Tanigawa K, Watanabe K. Multilocus sequence typing reveals a novel subspeciation of Lactobacillus delbrueckii. Microbiology. 2011;157(3):727–38.
Article
CAS
PubMed
Google Scholar
Chaillou S, Lucquin I, Najjari A, Zagorec M, Champomier-Vergès MC. Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories. PLoS One. 2013;8(9):e73253.
Article
CAS
PubMed
PubMed Central
Google Scholar
Feil EJ, Cooper JE, Grundmann H, Robinson DA, Enright MC, Berendt T, et al. How clonal is Staphylococcus aureus? J Bacteriol. 2003;185:3307–16.
Article
CAS
PubMed
PubMed Central
Google Scholar
Urwin R, Maiden MC. Multi-locus sequence typing: a tool for global epidemiology. T rends Microbiol. 2003;11(10):479–87.
Article
CAS
Google Scholar
Cooper JE, Feil EJ. Multilocus sequence typing-what is resolved? Trends Microbiol. 2004;12(8):373–7.
Article
CAS
PubMed
Google Scholar
de Las RB, Marcobal A, Muñoz R. Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes. Appl Environ Microbiol. 2004;70(12):7210–9.
Article
Google Scholar
Bain JM, Tavanti A, Davidson AD, Jacobsen MD, Shaw D, Gow NA, et al. Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus. J Clin Microbiol. 2007;45(5):1469–77.
Article
CAS
PubMed
PubMed Central
Google Scholar
Madslien EH, Olsen JS, Granum PE, Blatny JM. Genotyping of B. licheniformis based on a novel multi-locus sequence typing (MLST) scheme. BMC Microbiol. 2012;12:230.
Article
CAS
PubMed
PubMed Central
Google Scholar
Xu H, Sun Z, Liu W, Yu J, Song Y, Lv Q, et al. Multilocus sequence typing of Lactococcus lactis from naturally fermented milk foods in ethnic minority areas of China. J Dairy Sci. 2014;97(5):2633–45.
Article
CAS
PubMed
Google Scholar
Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol. 2004;186(5):1518–30.
Article
CAS
PubMed
PubMed Central
Google Scholar
Huson DH. SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics. 1998;14(1):68–73.
Article
CAS
PubMed
Google Scholar
Enright MC, Robinson DA, Randle G, Feil EJ, Grundmann H, Spratt BG. The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA). Proc Natl Acad Sci U S A. 2002;99(11):7687–92.
Article
CAS
PubMed
PubMed Central
Google Scholar
Felis GE, Dellaglio F. Taxonomy of Lactobacilli and Bifidobacteria. Curr Issues Intest Microbiol. 2007;8(2):44–61.
CAS
PubMed
Google Scholar
Dan T, Chen X, Bao QH, Liu WJ, Zhang HP. Effect of L-Threonine concentrations on acetaldehyde production and glyA gene expression in fermented milk by Streptococcus thermophilus. Food Biotechnol. 2012;26(3):280–92.
Article
Google Scholar
Sun ZH, Liu WJ, Song YQ, Xu HY, Yu J, Menghe B, Zhang HP, Chen YF: Population structure of Lactobacillus helveticus isolates from naturally fermented dairy products based on multilocus sequence typing. J dairy Sci 2015, DOI: http://dx.doi.org/10.3168/jds.2014-9133.
Morita H, Toh H, Fukuda S, Horikawa H, Oshima K, Suzuki T, et al. Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production. DNA Res. 2008;15(3):151–61.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bilhère E, Lucas PM, Claisse O, Lonvaud-Funel A. Multilocus sequence typing of Oenococcus oeni: detection of two subpopulations shaped by intergenic recombination. Appl Environ Microbiol. 2009;75(5):1291–300.
Article
PubMed
Google Scholar
Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 2003;19(18):2496–7.
Article
CAS
PubMed
Google Scholar
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 2009;25(11):1451–2.
Article
CAS
PubMed
Google Scholar
Jolley KA, Feil EJ, Chan MS, Maiden MC. Sequence type analysis and recombinational tests (START). Bioinformatics. 2001;17(12):1230–1.
Article
CAS
PubMed
Google Scholar
Suerbaum S, Lohrengel M, Sonnevend A, Ruberg F, Kist M. Allelic diversity and recombination in Campylobacter jejuni. J Bacteriol. 2001;183(8):2553–9.
Article
CAS
PubMed
PubMed Central
Google Scholar