Biebl H, Allgaier M, Tindall BJ, Koblizek M, Lunsdorf H, Pukall R, Wagner-Döbler I: Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates. Int J Syst Evol Microbiol. 2005, 55 (Pt 3): 1089-1096. 10.1099/ijs.0.63511-0.
Article
CAS
PubMed
Google Scholar
Buchan A, Gonzalez JM, Moran MA: Overview of the marine roseobacter lineage. Appl Environ Microbiol. 2005, 71 (10): 5665-5677. 10.1128/AEM.71.10.5665-5677.2005.
Article
CAS
PubMed Central
PubMed
Google Scholar
Howard EC, Henriksen JR, Buchan A, Reisch CR, Burgmann H, Welsh R, Ye W, Gonzalez JM, Mace K, Joye SB, et al: Bacterial taxa that limit sulfur flux from the ocean. Science. 2006, 314 (5799): 649-652. 10.1126/science.1130657.
Article
CAS
PubMed
Google Scholar
Kiene RP, Linn LJ, Gonzalez J, Moran MA, Bruton JA: Dimethylsulfoniopropionate and methanethiol are important precursors of methionine and protein-sulfur in marine bacterioplankton. Appl Environ Microbiol. 1999, 65 (10): 4549-4558.
CAS
PubMed Central
PubMed
Google Scholar
King GM: Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity. Appl Environ Microbiol. 2003, 69 (12): 7257-7265. 10.1128/AEM.69.12.7257-7265.2003.
Article
CAS
PubMed Central
PubMed
Google Scholar
Buchan A, Collier LS, Neidle EL, Moran MA: Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage. Appl Environ Microbiol. 2000, 66 (11): 4662-4672. 10.1128/AEM.66.11.4662-4672.2000.
Article
CAS
PubMed Central
PubMed
Google Scholar
Buchan A, Neidle EL, Moran MA: Diversity of the ring-cleaving dioxygenase gene pcaH in a salt marsh bacterial community. Appl Environ Microbiol. 2001, 67 (12): 5801-5809. 10.1128/AEM.67.12.5801-5809.2001.
Article
CAS
PubMed Central
PubMed
Google Scholar
Yurkov VV, Beatty JT: Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev. 1998, 62 (3): 695-724.
CAS
PubMed Central
PubMed
Google Scholar
Béjà O, Suzuki MT, Heidelberg JF, Nelson WC, Preston CM, Hamada T, Eisen JA, Fraser CM, DeLong EF: Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature. 2002, 415 (6872): 630-633. 10.1038/415630a.
Article
PubMed
Google Scholar
Kolber ZS, Plumley FG, Lang AS, Beatty JT, Blankenship RE, VanDover CL, Vetriani C, Koblizek M, Rathgeber C, Falkowski PG: Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science. 2001, 292 (5526): 2492-2495. 10.1126/science.1059707.
Article
CAS
PubMed
Google Scholar
Kolber ZS, Van Dover CL, Niederman RA, Falkowski PG: Bacterial photosynthesis in surface waters of the open ocean. Nature. 2000, 407 (6801): 177-179. 10.1038/35025044.
Article
CAS
PubMed
Google Scholar
Wagner-Döbler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, et al: The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea. Isme J. 2009
Google Scholar
Swingley WD, Sadekar S, Mastrian SD, Matthies HJ, Hao J, Ramos H, Acharya CR, Conrad AL, Taylor HL, Dejesa LC, et al: The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism. J Bacteriol. 2007, 189 (3): 683-690. 10.1128/JB.01390-06.
Article
CAS
PubMed Central
PubMed
Google Scholar
Martens T, Heidorn T, Pukall R, Simon M, Tindall BJ, Brinkhoff T: Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. Int J Syst Evol Microbiol. 2006, 56 (Pt 6): 1293-1304. 10.1099/ijs.0.63724-0.
Article
CAS
PubMed
Google Scholar
Alavi MR: Predator/prey interaction between Pfiesteria piscicida and Rhodomonas mediated by a marine alpha proteobacterium. Microb Ecol. 2004, 47 (1): 48-58. 10.1007/s00248-003-1018-7.
Article
CAS
PubMed
Google Scholar
Christensen B, Nielsen J: Metabolic network analysis of Penicillium chrysogenum using (13)C-labeled glucose. Biotechnol Bioeng. 2000, 68 (6): 652-659. 10.1002/(SICI)1097-0290(20000620)68:6<652::AID-BIT8>3.0.CO;2-J.
Article
CAS
PubMed
Google Scholar
Dauner M, Bailey JE, Sauer U: Metabolic flux analysis with a comprehensive isotopomer model in Bacillus subtilis. Biotechnol Bioeng. 2001, 76 (2): 144-156. 10.1002/bit.1154.
Article
CAS
PubMed
Google Scholar
Fürch T, Hollmann R, Wittmann C, Wang W, Deckwer WD: Comparative study on central metabolic fluxes of Bacillus megaterium strains in continuous culture using 13C labelled substrates. Bioprocess Biosyst Eng. 2007, 30 (1): 47-59. 10.1007/s00449-006-0095-7.
Article
PubMed
Google Scholar
Wittmann C, Hans M, van Winden WA, Ras C, Heijnen JJ: Dynamics of intracellular metabolites of glycolysis and TCA cycle during cell-cycle-related oscillation in Saccharomyces cerevisiae. Biotechnol Bioeng. 2005, 89 (7): 839-847. 10.1002/bit.20408.
Article
CAS
PubMed
Google Scholar
Fischer E, Zamboni N, Sauer U: High-throughput metabolic flux analysis based on gas chromatography-mass spectrometry derived 13C constraints. Anal Biochem. 2004, 325 (2): 308-316. 10.1016/j.ab.2003.10.036.
Article
CAS
PubMed
Google Scholar
Sauer U, Hatzimanikatis V, Bailey JE, Hochuli M, Szyperski T, Wüthrich K: Metabolic fluxes in riboflavin-producing Bacillus subtilis. Nat Biotechnol. 1997, 15 (5): 448-452. 10.1038/nbt0597-448.
Article
CAS
PubMed
Google Scholar
Wendisch VF, de Graaf AA, Sahm H, Eikmanns BJ: Quantitative determination of metabolic fluxes during coutilization of two carbon sources: comparative analyses with Corynebacterium glutamicum during growth on acetate and/or glucose. J Bacteriol. 2000, 182 (11): 3088-3096. 10.1128/JB.182.11.3088-3096.2000.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lessie TG, Phibbs PV: Alternative pathways of carbohydrate utilization in pseudomonads. Annu Rev Microbiol. 1984, 38: 359-388. 10.1146/annurev.mi.38.100184.002043.
Article
CAS
PubMed
Google Scholar
Lynn AR, Sokatch JR: Incorporation of isotope from specifically labeled glucose into alginates of Pseudomonas aeruginosa and Azotobacter vinelandii. J Bacteriol. 1984, 158 (3): 1161-1162.
CAS
PubMed Central
PubMed
Google Scholar
Zech H, Thole S, Schreiber K, Kalhöfer D, Voget S, Schomburg D, Rabus R: Growth phase-dependent global protein and metabolite profiles of Phaeobacter gallaeciensis strain DSM 1 a member of the marine Roseobacter clade. Proteomics. 7395, 9: 3677-3697. 10.1002/pmic.200900120.
Article
Google Scholar
Kiefer P, Heinzle E, Zelder O, Wittmann C: Comparative metabolic flux analysis of lysine-producing Corynebacterium glutamicum cultured on glucose or fructose. Appl Environ Microbiol. 2004, 70 (1): 229-239. 10.1128/AEM.70.1.229-239.2004.
Article
CAS
PubMed Central
PubMed
Google Scholar
Wittmann C, Hans M, Heinzle E: In vivo analysis of intracellular amino acid labelings by GC/MS. Anal Biochem. 2002, 307 (2): 379-382. 10.1016/S0003-2697(02)00030-1.
Article
CAS
PubMed
Google Scholar
Guo ZK, Lee WN, Katz J, Bergner AE: Quantitation of positional isomers of deuterium-labeled glucose by gas chromatography/mass spectrometry. Anal Biochem. 1992, 204 (2): 273-282. 10.1016/0003-2697(92)90238-3.
Article
CAS
PubMed
Google Scholar
Lee WN, Byerley LO, Bergner EA, Edmond J: Mass isotopomer analysis: theoretical and practical considerations. Biol Mass Spectrom. 1991, 20 (8): 451-458. 10.1002/bms.1200200804.
Article
CAS
PubMed
Google Scholar
Gardner PR, Fridovich I: Superoxide sensitivity of the Escherichia coli 6-phosphogluconate dehydratase. J Biol Chem. 1991, 266 (3): 1478-1483.
CAS
PubMed
Google Scholar
Peng L, Shimizu K: Global metabolic regulation analysis for Escherichia coli K12 based on protein expression by 2-dimensional electrophoresis and enzyme activity measurement. Appl Microbiol Biotechnol. 2003, 61 (2): 163-178.
Article
CAS
PubMed
Google Scholar
Gancedo JM, Gancedo C: Fructose-1,6-diphosphatase, phosphofructokinase and glucose-6-phosphate dehydrogenase from fermenting and non fermenting yeasts. Arch Mikrobiol. 1971, 76 (2): 132-138. 10.1007/BF00411787.
Article
CAS
PubMed
Google Scholar
Fischer E, Sauer U: Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur J Biochem. 2003, 270 (5): 880-891. 10.1046/j.1432-1033.2003.03448.x.
Article
CAS
PubMed
Google Scholar
Szyperski T: Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur J Biochem. 1995, 232 (2): 433-448. 10.1111/j.1432-1033.1995.tb20829.x.
Article
CAS
PubMed
Google Scholar
Becker J, Klopprogge C, Wittmann C: Metabolic responses to pyruvate kinase deletion in lysine producing Corynebacterium glutamicum. Microb Cell Fact. 2008, 7: 8-10.1186/1475-2859-7-8.
Article
PubMed Central
PubMed
Google Scholar