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  1. Fecal microbiota transplantation (FMT) induces remission in ulcerative colitis (UC). However, the treatment effect of FMT diminishes over time. Maintaining the diversity of the gut flora for long periods may i...

    Authors: Yao Wei, Jianfeng Gong, Weiming Zhu, Hongliang Tian, Chao Ding, Lili Gu, Ning Li and Jieshou Li
    Citation: BMC Microbiology 2016 16:255
  2. Antimicrobial resistance (AMR) is a growing and significant threat to public health on a global scale. Escherichia coli comprises Gram-negative, fecal-borne pathogenic and commensal bacteria that are frequently a...

    Authors: Beatus Lyimo, Joram Buza, Murugan Subbiah, Woutrina Smith and Douglas R. Call
    Citation: BMC Microbiology 2016 16:254
  3. Mycobacterium tuberculosis infection is thought to induce oxidative stress. N-acetyl-cysteine (NAC) is widely used in patients with chronic pulmonary diseases including tuberculosis du...

    Authors: Eduardo P. Amaral, Elisabete L. Conceição, Diego L. Costa, Michael S. Rocha, Jamocyr M. Marinho, Marcelo Cordeiro-Santos, Maria Regina D’Império-Lima, Theolis Barbosa, Alan Sher and Bruno B. Andrade
    Citation: BMC Microbiology 2016 16:251
  4. Biofilm production represents an important virulence and pathogenesis factor for Staphylococcus aureus. The formation of biofilms on medical devices is a major concern in hospital environments, as they can become...

    Authors: Tauá Alves Melo, Thalis Ferreira dos Santos, Milena Evangelista de Almeida, Luiz Alberto Gusmão Fontes Junior, Ewerton Ferraz Andrade, Rachel Passos Rezende, Lucas Miranda Marques and Carla Cristina Romano
    Citation: BMC Microbiology 2016 16:250
  5. In Escherichia coli, nagD, yrfG, yjjG, yieH, yigL, surE, and yfbR encode 5′-nucleotidases that hydrolyze the phosphate group of 5′-nucleotides. In Bacillus subtilis, genes encoding 5′-nucleotidase have remained t...

    Authors: Ayako Terakawa, Ayane Natsume, Atsushi Okada, Shogo Nishihata, Junko Kuse, Kosei Tanaka, Shinji Takenaka, Shu Ishikawa and Ken-ichi Yoshida
    Citation: BMC Microbiology 2016 16:249
  6. Human milk oligosaccharides (HMOs) are one of the major glycan source of the infant gut microbiota. The two species that predominate the infant bifidobacteria community, Bifidobacterium longum subsp. infantis and...

    Authors: Vera Bunesova, Christophe Lacroix and Clarissa Schwab
    Citation: BMC Microbiology 2016 16:248
  7. Reversible protein phosphorylation catalyzed by protein kinases and phosphatases is the primary mechanism for signal transduction in all living organisms. Streptococcus pneumoniae encodes a single Ser/Thr protein...

    Authors: Aleš Ulrych, Nela Holečková, Jana Goldová, Linda Doubravová, Oldřich Benada, Olga Kofroňová, Petr Halada and Pavel Branny
    Citation: BMC Microbiology 2016 16:247
  8. Quinupristin/dalfopristin (Q/D) is a valuable alternative antibiotic to vancomycin for the treatment of multi-drug resistant Enterococcus faecium infections. However, resistance to Q/D in E. faecium clinical isol...

    Authors: Shanshan Wang, Yinjuan Guo, Jingnan Lv, Xiuqin Qi, Dan Li, Zengqiang Chen, Xueqing Zhang, Liangxing Wang and Fangyou Yu
    Citation: BMC Microbiology 2016 16:246
  9. The microbiota plays an essential role in host health, particularly through competition with opportunistic pathogens. Changes in total bacterial load and microbiota structure can indicate early stages of disea...

    Authors: Andrea M. Tarnecki, William F. Patterson III and Covadonga R. Arias
    Citation: BMC Microbiology 2016 16:245
  10. Paenibacillus polymyxa is a plant-growth promoting rhizobacterium that could be exploited as an environmentally friendlier alternative to chemical fertilizers and pesticides. Various s...

    Authors: Brian Weselowski, Naeem Nathoo, Alexander William Eastman, Jacqueline MacDonald and Ze-Chun Yuan
    Citation: BMC Microbiology 2016 16:244
  11. Biofilms are a highly structured consortia of microorganisms that adhere to a substrate and are encased within an extracellular matrix (ECM) that is produced by the organisms themselves. Aspergillus fumigatus is ...

    Authors: Alejandra Itzel González-Ramírez, Adrián Ramírez-Granillo, María Gabriela Medina-Canales, Aída Verónica Rodríguez-Tovar and María Angeles Martínez-Rivera
    Citation: BMC Microbiology 2016 16:243
  12. Interleukin (IL)-8 is the key agent for initiating an inflammatory response to infection with Helicobacter pylori. Some strains of Lactobacillus spp. are known to colonize the stomach and suppress inflammation ca...

    Authors: Wimonrat Panpetch, Jennifer K. Spinler, James Versalovic and Somying Tumwasorn
    Citation: BMC Microbiology 2016 16:242
  13. Leptospirosis is an important reemerging zoonosis, with more than half a million cases reported annually, and is caused by pathogenic Leptospira species. Development of a universal vaccine is one of the major str...

    Authors: Xu’ai Lin, Guohui Xiao, Dongjiao Luo, Liangliang Kong, Xu Chen, Dexter Sun and Jie Yan
    Citation: BMC Microbiology 2016 16:241
  14. Despite the fact that most vitamins are present in a variety of foods, malnutrition, unbalanced diets or insufficient intake of foods are still the cause of vitamin deficiencies in humans in some countries. Vi...

    Authors: Andrea Carolina Torres, Verónica Vannini, Julieta Bonacina, Graciela Font, Lucila Saavedra and María Pía Taranto
    Citation: BMC Microbiology 2016 16:240
  15. Proteins from the LytR-CpsA-Psr family are found in almost all Gram-positive bacteria. Although LCP proteins have been studied in other pathogens, their functions in enterococci remain uncharacterized. The Psr...

    Authors: Maxime Maréchal, Ana Amoroso, Cécile Morlot, Thierry Vernet, Jacques Coyette and Bernard Joris
    Citation: BMC Microbiology 2016 16:239
  16. The present study was conducted to compare the differences in gut microbiota composition and gut-phenotypes among pig breeds, and determine whether these differences would transmit to mice colonized with fecal...

    Authors: H. Diao, H. L. Yan, Y. Xiao, B. Yu, J. Yu, J. He, P. Zheng, B.H. Zeng, H. Wei, X.B. Mao and D.W. Chen
    Citation: BMC Microbiology 2016 16:238

    The Erratum to this article has been published in BMC Microbiology 2016 16:253

  17. Group A Streptococcus (GAS; Streptococcus pyogenes) causes a range of mild to severe infections in humans. It can also colonize healthy persons asymptomatically. Therefore, it is important to study GAS carriage i...

    Authors: Tejaswini Kulkarni, Chihiro Aikawa, Takashi Nozawa, Kazunori Murase, Fumito Maruyama and Ichiro Nakagawa
    Citation: BMC Microbiology 2016 16:237
  18. Accurate detection of Neisseria gonorrhoeae antimicrobial resistance is essential for appropriate management and prevention of spread of infection in the community. In this study Calibrated Dichotomous Sensitivit...

    Authors: Pushpa Bhawan Mal, Kauser Jabeen, Joveria Farooqi, Magnus Unemo and Erum Khan
    Citation: BMC Microbiology 2016 16:236
  19. Community and nosocomial infections by Pseudomonas aeruginosa still create a major therapeutic challenge. The resistance of this opportunist pathogen to β-lactam antibiotics is determined mainly by production of ...

    Authors: Cristian Gustavo Aguilera Rossi, Paulino Gómez-Puertas and Juan Alfonso Ayala Serrano
    Citation: BMC Microbiology 2016 16:234
  20. The interaction mechanism between crop and soil microbial communities is a key issue in both agriculture and soil ecology. However, how soil microbial communities respond to crop planting and ultimately affect...

    Authors: Jiaojiao Niu, Zhongwen Rang, Chao Zhang, Wu Chen, Feng Tian, Huaqun Yin and Linjian Dai
    Citation: BMC Microbiology 2016 16:233
  21. Although interest in animal pathogenic oomycetes is increasing, the molecular basis mediating oomycete-animal relationships remains virtually unknown. Crinkler (CRN) genes, which have been traditionally associ...

    Authors: Isabel E. Olivera, Katrina C. Fins, Sara A. Rodriguez, Sumayyah K. Abiff, Jaime L. Tartar and Aurélien Tartar
    Citation: BMC Microbiology 2016 16:232
  22. Clostridium difficile is a spore-forming obligate anaerobe that can remain viable for extended periods, even in the presence of antibiotics, which contributes to the persistence of thi...

    Authors: Catherine E. Isom, Smita K. Menon, Leonard M. Thomas, Ann H. West, George B. Richter-Addo and Elizabeth A. Karr
    Citation: BMC Microbiology 2016 16:231
  23. Staphylococcus aureus is the principle causative pathogen of osteomyelitis and implant-associated bone infections. It is able to invade and to proliferate inside osteoblasts thus avoid...

    Authors: Walid Mohamed, Eugen Domann, Trinad Chakraborty, Gopala Mannala, Katrin S. Lips, Christian Heiss, Reinhard Schnettler and Volker Alt
    Citation: BMC Microbiology 2016 16:230
  24. Increasing age, several co-morbidities, environmental contamination, antibiotic exposure and other intestinal perturbations appear to be the greatest risk factors for C. difficile infection (CDI). Therefore, elde...

    Authors: Cristina Rodriguez, Bernard Taminiau, Nicolas Korsak, Véronique Avesani, Johan Van Broeck, Philippe Brach, Michel Delmée and Georges Daube
    Citation: BMC Microbiology 2016 16:229
  25. Lactic acid bacteria (LAB) are part of the gut microbiota and produce ribosomally synthesized antimicrobial peptides or bacteriocins with interest as natural food preservatives and therapeutic agents. Bacterio...

    Authors: Sara Arbulu, Juan J. Jiménez, Loreto Gútiez, Cristina Campanero, Rosa del Campo, Luis M. Cintas, Carmen Herranz and Pablo E. Hernández
    Citation: BMC Microbiology 2016 16:228
  26. Serine/threonine protein kinases are highly conserved kinases with a wide distribution in microbes and with multiple functions. Mesorhizobium alhagi CCNWXJ12-2, a α-proteobacterium which could be able to form sym...

    Authors: Xiaodong Liu, Yantao Luo, Zhefei Li and Gehong Wei
    Citation: BMC Microbiology 2016 16:227
  27. The role of Lactobacillus cell wall components in the protection against pathogen infection in the gut is still largely unexplored. We have previously shown that L. amylovorus DSM 16698T is able to reduce the ent...

    Authors: Marianna Roselli, Alberto Finamore, Ulla Hynönen, Airi Palva and Elena Mengheri
    Citation: BMC Microbiology 2016 16:226
  28. Pneumococcal adherence to the nasopharyngeal epithelium is a critical step in colonisation and disease. The probiotic bacterium, Streptococcus salivarius, can inhibit pneumococcal adherence to epithelial cells in...

    Authors: Jayne Manning, Eileen M. Dunne, Philip A. Wescombe, John D. F. Hale, E. Kim Mulholland, John R. Tagg, Roy M. Robins-Browne and Catherine Satzke
    Citation: BMC Microbiology 2016 16:225
  29. Despite the high prevalence of genotype 1b hepatitis C virus (HCV) among patients, a cell culture system that permits entire viral life cycle of genotype 1b isolates is limited. To develop a cell-cultured hepa...

    Authors: Ken-ichi Mori, Akihiro Matsumoto, Noboru Maki, Yuki Ichikawa, Eiji Tanaka and Shintaro Yagi
    Citation: BMC Microbiology 2016 16:224
  30. Microalgae, which can absorb carbon dioxide and then transform it into lipid, are promising candidates to produce renewable energy, especially biodiesel. The paucity of genomic information, however, limits the...

    Authors: Lin Li, Guoqiang Zhang and Qinhong Wang
    Citation: BMC Microbiology 2016 16:223
  31. Mycoplasma ovipneumoniae (M. ovipneumoniae) is a species of Mycoplasma bacteria that specifically infects sheep and goat, causing ovine infectious pleuropneumonia. However, the mechani...

    Authors: Yanan Li, Zhongjia Jiang, Di Xue, Guangcun Deng, Min Li, Xiaoming Liu and Yujiong Wang
    Citation: BMC Microbiology 2016 16:222
  32. Despite the implementation of prevention guidelines, group B Streptococcal (GBS) infection remains a leading cause of sepsis, pneumonia, and meningitis, resulting in significant neonatal morbidity and mortalit...

    Authors: Christina Clarke, Louise O’Connor, Heather Carré-Skinner, Olaf Piepenburg and Terry J. Smith
    Citation: BMC Microbiology 2016 16:221
  33. Organoselenium compounds have antimicrobial activity against some bacteria and fungi; furthermore, the antioxidant activity of diselenides has been demonstrated. The aim of the present work was to examine the ...

    Authors: Luca Sancineto, Miranda Piccioni, Stefania De Marco, Rita Pagiotti, Vanessa Nascimento, Antonio Luiz Braga, Claudio Santi and Donatella Pietrella
    Citation: BMC Microbiology 2016 16:220
  34. The study used a set of 407 human extraintestinal pathogenic E. coli strains (ExPEC) isolated from (1) skin and soft tissue infections, (2) respiratory infections, (3) intra-abdominal infections, and (4) genital ...

    Authors: Lenka Micenková, Juraj Bosák, Martin Vrba, Alena Ševčíková and David Šmajs
    Citation: BMC Microbiology 2016 16:218
  35. Due to broad range of clinical and industrial applications of cholesterol oxidase, isolation and screening of bacterial strains producing extracellular form of cholesterol oxidase is of great importance.

    Authors: Noura El-Ahmady El-Naggar, Nancy M. El-Shweihy and Sara M. El-Ewasy
    Citation: BMC Microbiology 2016 16:217

    The Erratum to this article has been published in BMC Microbiology 2016 16:257

  36. Gonorrhoea is a sexually transmitted infection caused by the Gram-negative bacterium Neisseria gonorrhoeae. Resistance to first-line empirical monotherapy has emerged, so robust methods are needed to evaluate the...

    Authors: Sunniva Foerster, Magnus Unemo, Lucy J. Hathaway, Nicola Low and Christian L. Althaus
    Citation: BMC Microbiology 2016 16:216
  37. Pertussis or whooping cough is an acute respiratory illness caused by the Gram-negative pathogen Bordetella pertussis. Despite high vaccination coverage whooping cough is currently re-emerging in many developed c...

    Authors: Elisa Zanaboni, Vanessa Arato, Mariagrazia Pizza, Anja Seubert and Rosanna Leuzzi
    Citation: BMC Microbiology 2016 16:215
  38. Chlorhexidine (CHX) is used in oral care products to help control dental plaque. In this study dental plaque bacteria were grown on media containing 2 μg/ml chlorhexidine gluconate to screen for bacteria with ...

    Authors: Hafiz Ghulam Murtaza Saleem, Christine Ann Seers, Anjum Nasim Sabri and Eric Charles Reynolds
    Citation: BMC Microbiology 2016 16:214
  39. Bovine tuberculosis (bTB), which is caused by Mycobacterium bovis and M. caprae, is a notifiable animal disease in Germany. Diagnostic procedure is based on a prescribed protocol that is published in the framewor...

    Authors: Shari Fell, Stephanie Bröckl, Mathias Büttner, Anna Rettinger, Pia Zimmermann and Reinhard K. Straubinger
    Citation: BMC Microbiology 2016 16:213
  40. Processing of fresh produce exposes cut surfaces of plant cell walls that then become vulnerable to human foodborne pathogen attachment and contamination, particularly by Salmonella enterica. Plant cell walls are...

    Authors: Michelle Sze-Fan Tan, Sean C. Moore, Rico F. Tabor, Narelle Fegan, Sadequr Rahman and Gary A. Dykes
    Citation: BMC Microbiology 2016 16:212
  41. Salmonella Typhimurium (STM) is an important cause of foodborne outbreaks worldwide. Subtyping of STM remains critical to outbreak investigation, yet current techniques (e.g. multilocu...

    Authors: Anastasia Phillips, Cristina Sotomayor, Qinning Wang, Nadine Holmes, Catriona Furlong, Kate Ward, Peter Howard, Sophie Octavia, Ruiting Lan and Vitali Sintchenko
    Citation: BMC Microbiology 2016 16:211
  42. Avian beta-defensins (AvBD) are small, cationic, antimicrobial peptides. The potential application of AvBDs as alternatives to antibiotics has been the subject of interest. However, the mechanisms of action re...

    Authors: Ming Yang, Chunye Zhang, Xuehan Zhang, Michael Z. Zhang, George E. Rottinghaus and Shuping Zhang
    Citation: BMC Microbiology 2016 16:210
  43. There is a rapid emergence of multiple resistant gram-negative bacteria due to overuse of antibiotics in the treatment of infections. Biofilms consist of polymicrobial communities that survive the host’s defen...

    Authors: Chongcong Wu, Sravya Nakka, Sepahdar Mansouri, Torbjörn Bengtsson, Tayeb Nayeri and Fariba Nayeri
    Citation: BMC Microbiology 2016 16:209
  44. Enteroaggregative (EAEC) and Shiga-toxin producing Escherichia coli (STEC) are a major cause of diarrhea worldwide. E. coli carrying both virulence factors characteristic for EAEC and STEC and producing extended-...

    Authors: Nguyen Vinh Trung, Hoang Ngoc Nhung, Juan J. Carrique-Mas, Ho Huynh Mai, Ha Thanh Tuyen, James Campbell, Nguyen Thi Nhung, Pham Van Minh, Jaap A. Wagenaar, Nguyen Thi Nhu Mai, Thai Quoc Hieu, Constance Schultsz and Ngo Thi Hoa
    Citation: BMC Microbiology 2016 16:208
  45. Non-typhoid Salmonella Typhimurium (S. Typhimurium) accounts for a high number of registered salmonellosis cases, and O-serotyping is one important tool for monitoring epidemiology and spread of the disease. More...

    Authors: Andreas Schmidt, Wolfgang Rabsch, Nina K. Broeker and Stefanie Barbirz
    Citation: BMC Microbiology 2016 16:207
  46. Bacterial two-component regulatory systems (TCRS) are associated with the expression of virulence factors and antibiotic susceptibility. In Staphylococcus aureus, 16 TCRS types have been identified. The histidine...

    Authors: Jung Wook Kim, Hyun-Kyung Kim, Gi Su Kang, Il-Hwan Kim, Hwa Su Kim, Yeong Seon Lee and Jae Il Yoo
    Citation: BMC Microbiology 2016 16:206

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