Thursby E, Juge N. Introduction to the human gut microbiota. Biochem J. 2017;474(11):1823–36.
PubMed
CAS
Google Scholar
Kho ZY, Lal SK. The human gut microbiome – a potential controller of wellness and disease. Front Microbiol. 2018;9:1835.
PubMed
PubMed Central
Google Scholar
Rowland I, Gibson G, Heinken A, et al. Gut microbiota functions: metabolism of nutrients and other food components. Eur J Nutr. 2018;57(1):1–24.
PubMed
CAS
Google Scholar
Wilkins LJ, Monga M, Miller AW. Defining dysbiosis for a cluster of chronic diseases. Sci Rep. 2019;9(1):12918.
PubMed
PubMed Central
Google Scholar
Finlay BB, Pettersson S, Melby MK, et al. The microbiome mediates environmental effects on aging. Bioessays. 2019;41(10):e1800257.
PubMed
Google Scholar
Feng Q, Chen WD, Wang YD. Gut microbiota: an integral moderator in health and disease. Front Microbiol. 2018;9:151.
PubMed
PubMed Central
Google Scholar
Nagpal R, Mainali R, Ahmadi S, et al. Gut microbiome and aging: physiological and mechanistic insights. Nutr Healthy Aging. 2018;4(4):267–85.
PubMed
PubMed Central
Google Scholar
Aleman FDD, Valenzano DR. Microbiome evolution during host aging. PLoS Pathog. 2019;15(7):e1007727.
PubMed
PubMed Central
CAS
Google Scholar
Xu C, Zhu H, Qiu P. Aging progression of human gut microbiota. BMC Microbiol. 2019;19(1):236.
PubMed
PubMed Central
Google Scholar
Cukrowska B. Microbial and nutritional programming–the importance of the microbiome and early exposure to potential food allergens in the development of allergies. Nutrients. 2018;10(10):1541.
PubMed Central
Google Scholar
McCoy KD, Thomson CA. The impact of maternal microbes and microbial colonization in early life on hematopoiesis. J Immunol. 2018;200(8):2519–26.
PubMed
CAS
Google Scholar
Robertson RC, Manges AR, Finlay BB, et al. The human microbiome and child growth – first 1000 days and beyond. Trends Microbiol. 2019;27(2):131–47.
PubMed
CAS
Google Scholar
Walker RW, Clemente JC, Peter I, et al. The prenatal gut microbiome: are we colonized with bacteria in utero? Pediatr Obes. 2017;12(Suppl 1):3–17.
PubMed
PubMed Central
Google Scholar
Milani C, Duranti S, Bottacini F, Casey E, et al. The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota. Microbiol Mol Biol Rev. 2017;81(4):e00036–17.
PubMed
PubMed Central
Google Scholar
Koleva PT, Kim JS, Scott JA, et al. Microbial programming of health and disease starts during fetal life. Birth Defects Res C Embryo Today. 2015;105(4):265–77.
PubMed
CAS
Google Scholar
Zhuang L, Chen H, Zhang S, Zhuang J, Li Q, Feng Z. Intestinal microbiota in early life and its implications on childhood health. Genomics Proteomics Bioinformatics. 2019;17(1):13–25.
PubMed
PubMed Central
Google Scholar
Fouhy F, Watkins C, Hill CJ, et al. Perinatal factors affect the gut microbiota up to four years after birth. Nat Commun. 2019;10(1):1517.
PubMed
PubMed Central
Google Scholar
Rondanelli M, Giacosa A, Faliva MA, et al. Review on microbiota and effectiveness of probiotics use in older. World J Clin Cases. 2015;3(2):156–62.
PubMed
PubMed Central
Google Scholar
Lu M, Wang Z. Microbiota and aging. Adv Exp Med Biol. 2018;1086:141–56.
PubMed
CAS
Google Scholar
Clemente JC, Manasson J, Scher JU. The role of the gut microbiome in systemic inflammatory disease. BMJ. 2018;360:j5145.
PubMed
PubMed Central
Google Scholar
Lee CJ, Sears CL, Maruthur N. Gut microbiome and its role in obesity and insulin resistance. Ann N Y Acad Sci. 2020;1461:37–52.
PubMed
Google Scholar
Blander JM, Longman RS, Iliev ID, et al. Regulation of inflammation by microbiota interactions with the host. Nat Immunol. 2017;18(8):851–60.
PubMed
PubMed Central
CAS
Google Scholar
Roy Sarkar S, Banerjee S. Gut microbiota in neurodegenerative disorders. J Neuroimmunol. 2019;328:98–104.
PubMed
CAS
Google Scholar
Ticinesi A, Nouvenne A, Cerundolo N, et al. Gut microbiota, muscle mass and function in aging: a focus on physical frailty and sarcopenia. Nutrients. 2019;11(7):1633.
PubMed Central
CAS
Google Scholar
Yatsonsky Ii D, Pan K, Shendge VB, et al. Linkage of microbiota and osteoporosis: a mini literature review. World J Orthop. 2019;10(3):123–7.
PubMed
PubMed Central
Google Scholar
Chen X, Devaraj S. Gut microbiome in obesity, metabolic syndrome, and diabetes. Curr Diab Rep. 2018;18:129.
PubMed
CAS
Google Scholar
Singer–Englar T, Barlow G, Mathur R. Obesity, diabetes, and the gut microbiome: an updated review. Expert Rev Gastroenterol Hepatol. 2019;13:3–15.
PubMed
Google Scholar
Jin M, Qian Z, Yin J, et al. The role of intestinal microbiota in cardiovascular disease. J Cell Mol Med. 2019;23(4):2343–50.
PubMed
PubMed Central
Google Scholar
Vivarelli S, Salemi R, Candido S, et al. Gut microbiota and cancer: from pathogenesis to therapy. Cancers (Basel). 2019;11(1):38.
CAS
Google Scholar
Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486:207–14.
Google Scholar
Li W, Ma ZS. FBA ecological guild: trio of Firmicutes–Bacteroidetes alliance against Actinobacteria in human oral microbiome. Sci Rep. 2020;10:287.
PubMed
PubMed Central
CAS
Google Scholar
Liang D, Leung RK, Guan W, et al. Involvement of gut microbiome in human health and disease: brief overview, knowledge gaps and research opportunities. Gut Pathog. 2018;10:3.
PubMed
PubMed Central
Google Scholar
Woting A, Blaut M. The intestinal microbiota in metabolic disease. Nutrients. 2016;8(4):202.
PubMed
PubMed Central
Google Scholar
Fernandes J, Su W, Rahat–Rozenbloom S, et al. Adiposity, gut microbiota and faecal short chain fatty acids are linked in adult humans. Nutr Diabetes. 2014;4:e121.
PubMed
PubMed Central
CAS
Google Scholar
Bifari F, Ruocco C, Decimo I, et al. Amino acid supplements and metabolic health: a potential interplay between intestinal microbiota and systems control. Genes Nutr. 2017;12:27.
PubMed
PubMed Central
Google Scholar
Chambers ES, Preston T, Frost G, et al. Role of gut microbiota–generated short–chain fatty acids in metabolic and cardiovascular health. Curr Nutr Rep. 2018;7:198–206.
PubMed
PubMed Central
CAS
Google Scholar
Turnbaugh PJ, Ley RE, Mahowald MA, et al. An obesity–associated gut microbiome with increased capacity for energy harvest. Nature. 2006;444:1027–31.
PubMed
Google Scholar
Mariat D, Firmesse O, Levenez F, et al. The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC Microbiol. 2009;9:123.
PubMed
PubMed Central
CAS
Google Scholar
Park SH, Kim KA, Ahn YT, et al. Comparative analysis of gut microbiota in elderly people of urbanized towns and longevity villages. BMC Microbiol. 2015;15:49.
PubMed
PubMed Central
Google Scholar
Mäkivuokko H, Tiihonen K, Tynkkynen S, et al. The effect of age and non–steroidal anti–inflammatory drugs on human intestinal microbiota composition. Br J Nutr. 2010;103:227–34.
PubMed
Google Scholar
Claesson MJ, Cusack S, O'Sullivan O, et al. Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A. 2011;108(Suppl 1):4586–91.
PubMed
CAS
Google Scholar
Kundu P, Blacher E, Elinav E, et al. Our gut microbiome: the evolving inner self. Cell. 2017;171:1481–93.
PubMed
CAS
Google Scholar
Reza MM, Finlay BB, Pettersson S. Gut microbes, ageing & organ function: a chameleon in modern biology? EMBO Mol Med. 2019;11:e9872.
PubMed
PubMed Central
Google Scholar
Biagi E, Nylund L, Candela M, et al. Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians. PLoS One. 2010;5:e10667.
PubMed
PubMed Central
Google Scholar
Kim BS, Choi CW, Shin H, et al. Comparison of the gut microbiota of centenarians in longevity villages of South Korea with those of other age groups. J Microbiol Biotechnol. 2019;29:429–40.
PubMed
Google Scholar
Wu GD, Chen J, Hoffmann C, et al. Linking long–term dietary patterns with gut microbial enterotypes. Science. 2011;334:105–8.
PubMed
PubMed Central
CAS
Google Scholar
Inelmen EM, Toffanello ED, Enzi G, et al. Differences in dietary patterns between older and younger obese and overweight outpatients. J Nutr Health Aging. 2008;12:3–8.
PubMed
CAS
Google Scholar
Saraswati S, Sitaraman R. Aging and the human gut microbiota–from correlation to causality. Front Microbiol. 2015;5:764.
PubMed
PubMed Central
Google Scholar
Fulop T, Larbi A, Dupuis G, et al. Immunosenescence and inflamm–aging as two sides of the same coin: friends or foes? Front Immunol. 2018;8:1960.
PubMed
PubMed Central
Google Scholar
Zimmermann P, Curtis N. The effect of antibiotics on the composition of the intestinal microbiota – a systematic review. J Inf Secur. 2019;79:471–89.
Google Scholar
Wilson R, Abbott JH. Age, period and cohort effects on body mass index in New Zealand, 1997–2038. Aust N Z J Public Health. 2018;42:396–402.
PubMed
Google Scholar
Perissinotto E, Pisent C, Sergi G, Grigoletto F, ILSA Working Group (Italian Longitudinal Study on Ageing). Anthropometric measurements in the elderly: age and gender differences. Br J Nutr. 2002;87:177–86.
PubMed
CAS
Google Scholar
Frenzel A, Binder H, Walter N, Wirkner K, Loeffler M, Loeffler-Wirth H. The aging human body shape. NPJ Aging Mech Dis. 2020;6:5.
PubMed
PubMed Central
Google Scholar
Livshits G, Malkin I, Williams FM, Hart DJ, Hakim A, Spector TD. Longitudinal study of variation in body mass index in middle-aged UK females. Age (Dordr). 2012;34(5):1285–94.
Google Scholar
Koliada A, Syzenko G, Moseiko V, et al. Association between body mass index and Firmicutes/Bacteroidetes ratio in an adult Ukrainian population. BMC Microbiol. 2017;17:120.
PubMed
PubMed Central
Google Scholar
Kumar M, Babaei P, Ji B, Nielsen J. Human gut microbiota and healthy aging: recent developments and future prospective. Nutr Healthy Aging. 2016;4(1):3–16.
PubMed
PubMed Central
Google Scholar
Zhang BW, Li M, Ma LC, et al. A widely applicable protocol for DNA isolation from fecal samples. Biochem Genet. 2006;44:503–12.
PubMed
CAS
Google Scholar
Bacchetti De Gregoris T, Aldred N, Clare AS, et al. Improvement of phylum– and class–specific primers for real–time PCR quantification of bacterial taxa. J Microbiol Methods. 2011;86:351–6.
PubMed
CAS
Google Scholar