Kwon-Chung KJ, Sugui JA. Aspergillus fumigatus-what makes the species a ubiquitous human fungal pathogen? PLoS Pathog. 2013;9(12):e1003743.
Article
Google Scholar
Mullins J, Hutcheson PS, Slavin RG. Aspergillus fumigatus spore concentration in outside air: Cardiff and St Louis compared. Clin Allergy. 1984;14(4):351.
Article
CAS
Google Scholar
Mullins J, Harvey R, Seaton A. Sources and incidence of airborne Aspergillus fumigatus (Fres). Clin Allergy. 1976;6(3):209–17.
Article
CAS
Google Scholar
O’Gorman CM, Fuller HT. Prevalence of culturable airborne spores of selected allergenic and pathogenic fungi in outdoor air. Atmos Environ. 2008;42(18):4355–68.
Article
Google Scholar
VandenBergh MFQ, Verweij PE, Voss A. Epidemiology of nosocomial fungal infections: invasive aspergillosis and the environment. Diagn Microbiol Infect Dis. 1999;34(3):221–7.
Article
CAS
Google Scholar
Latgé JP. Aspergillus fumigatus and Aspergillosis. Clin Microbiol Rev. 1999;12(2):310–50.
PubMed
PubMed Central
Google Scholar
Ben-Ami R, Lewis RE, Kontoyiannis DP. Enemy of the (immunosuppressed) state: an update on the pathogenesis of Aspergillus fumigatus infection. Br J Haematol. 2010;150(4):406–17.
CAS
PubMed
Google Scholar
Park SJ, Mehrad B. Innate immunity to Aspergillus species. Clin Microbiol Rev. 2009;22(4):535–51.
Article
CAS
Google Scholar
Khoufache K, Puel O, Loiseau N, Delaforge M, Rivollet D, Coste A, Cordonnier C, Escudier E, Botterel F, Bretagne S. Verruculogen associated with Aspergillus fumigatus hyphae and conidia modifies the electrophysiological properties of human nasal epithelial cells. BMC Microbiol. 2007;7(1):5.
Article
Google Scholar
Amitani R, Taylor G, Elezis EN, Llewellyn-Jones C, Mitchell J, Kuze F, Cole PJ, Wilson R. Purification and characterization of factors produced by Aspergillus fumigatus which affect human ciliated respiratory epithelium. Infect Immun. 1995;63(9):3266–71.
CAS
PubMed
PubMed Central
Google Scholar
Pitt JI. The current role of Aspergillus and Penicillium in human and animal health. Med Mycol. 1994;32(S1):17–32.
Article
Google Scholar
Peeters D, Clercx C. Update on canine sinonasal aspergillosis. Vet Clin N Am Small Anim Pract. 2007;37(5):901–16.
Article
Google Scholar
Sharman MJ, Mansfield CS. Sinonasal aspergillosis in dogs: a review. J Small Anim Pract. 2012;53(8):434–44.
Article
CAS
Google Scholar
Chakrabarti A, Das A, Panda N. Overview of fungal rhinosinusitis. Indian J Otolaryngol Head Neck Surg. 2004;56(4):251–8.
PubMed
PubMed Central
Google Scholar
Peeters D, Peters IR, Clercx C, Day MJ. Quantification of mRNA encoding cytokines and chemokines in nasal biopsies from dogs with sino-nasal aspergillosis. Vet Microbiol. 2006;114(3):318–26.
Article
CAS
Google Scholar
Day MJ. Canine sino-nasal aspergillosis: parallels with human disease. Med Mycol. 2009;47(S1):S323.
Article
Google Scholar
Barrs VR, van Doorn TM, Houbraken J, Kidd SE, Martin P, Pinheiro MD, Richardson M, Varga J, Samson RA. Aspergillus felis sp nov., an emerging agent of invasive aspergillosis in humans, cats, and dogs. PLoS One. 2013;8(6):e64871.
Article
CAS
Google Scholar
Mellado E, Garcia-Effron G, Alcazar-Fuoli L, Cuenca-Estrella M, Rodriguez-Tudela JL. Substitutions at methionine 220 in the 14α-sterol demethylase (Cyp51A) of Aspergillus fumigatus are responsible for resistance in vitro to azole antifungal drugs. Antimicrob Agents Chemother. 2004;48(7):2747.
Article
CAS
Google Scholar
Diaz-Guerra TM, Mellado E, Cuenca-Estrella M, Rodriguez-Tudela JL. A point mutation in the 14α- sterol demethylase gene cyp51A contributes to itraconazole resistance in Aspergillus fumigatus. Antimicrob Agents Chemother. 2003;47(3):1120–4.
Article
CAS
Google Scholar
Meis JF, Chowdhary A, Rhodes JL, Fisher MC, Verweij PE. Clinical implications of globally emerging azole resistance in Aspergillus fumigatus. Philos Trans R Soc Lond Ser B Biol Sci. 2016;371(1709) https://doi.org/10.1098/rstb.2015.0460.
Article
Google Scholar
Snelders E, van der Lee HA, Kuijpers J, Rijs AJ, Varga J, Samson RA, Mellado E, Donders AR, Melchers WJ, Verweij PE. Emergence of azole resistance in Aspergillus fumigatus and spread of a single resistance mechanism. PLoS Med. 2008;5(11):e219.
Article
Google Scholar
Arenup MC, Mavridou E, Mortensen KL, Snelders E, Frimodt-Moller N, Khan H, Melchers WJG, Verweij PE. Development of azole resistance in Aspergillus fumigatus during azole therapy associated with change in virulence. PLoS One. 2010;5(4):e10080.
Article
Google Scholar
Snelders E, Melchers WJG, Verweij PE. Azole resistance in Aspergillus fumigatus: a new challenge in the management of invasive aspergillosis? Future Microbiol. 2011;6(3):335.
Article
CAS
Google Scholar
van der Linden JWM, Camps SMT, Kampinga GA, Arends JP, Debets-Ossenkopp YJ, Haas PJ, Rijnders BJ, Kuijper EJ, Tiel FH, Varga J, Karawajczyk A, Zoll J, Melchers WJG, Verweij PE. Aspergillosis due to voriconazole highly resistant Aspergillus fumigatus and recovery of genetically related resistant isolates from domiciles. Clin Infect Dis. 2013;57(4):513–20.
Article
CAS
Google Scholar
Lestrade PPA, Meis JF, Arends JP, van der Beek, Martha T, de Brauwer E, van Dijk K, de Greeff SC, Haas P, Hodiamont CJ, Kuijper EJ, Leenstra T, Muller AE, Lashof O, Astrid ML, Rijnders BJ, Roelofsen E, Rozemeijer W, Tersmette M, Terveer EM, Verduin CM, Wolfhagen MJHM, Melchers WJG, Verweij PE. Diagnosis and management of aspergillosis in the Netherlands: a national survey. Mycoses. 2016;59(2):101–7.
Article
Google Scholar
Chowdhary A, Sharma C, Meis JF. Azole-resistant Aspergillosis: epidemiology, molecular mechanisms, and treatment. J Infect Dis. 2017;216(suppl_3):S444.
Article
Google Scholar
Meneau I, Coste AT, Sanglard D. Identification of Aspergillus fumigatus multidrug transporter genes and their potential involvement in antifungal resistance. Med Mycol. 2016;54(6):616–27.
Article
CAS
Google Scholar
Raper KB, Fennell DI. The genus Aspergillus. New York: Krieger; 1965.
Google Scholar
Samson RA, Visagie C, Houbraken J, Hong S, Hubka V, Klaassen CHW, Perrone G, Seifert KA, Susca A, Tanney JB, Varga J, Kocsube S, Szigeti G, Yaguchi T, Frisvad JC. Phylogeny, identification and nomenclature of the genus Aspergillus. Stud Mycol. 2014;78(78):141–73.
Article
CAS
Google Scholar
Fuhren J, Voskuil WS, Boel CHE, Haas PJA, Hagen F, Meis JF, Kusters JG. High prevalence of azole resistance in Aspergillus fumigatus isolates from high-risk patients. J Antimicrob Chemother. 2015;70(10):2894.
Article
CAS
Google Scholar
Schneider CA, Rasband WS, Eliceiri KW. NIH image to ImageJ: 25 years of image analysis. Nat Methods. 2012;9(7):671.
Article
CAS
Google Scholar
Huerta-Cepas J, Serra F, Bork P. ETE 3: reconstruction, analysis, and visualization of phylogenomic data. Mol Biol Evol. 2016;33(6):1635–8.
Article
CAS
Google Scholar
De Valk HA, Meis J, Curfs IM, Muehlethaler K, Mouton JW, Klaassen C. Use of a novel panel of nine short tandem repeats for exact and high-resolution fingerprinting of Aspergillus fumigatus isolates. J Clin Microbiol. 2005;43(8):4112–20.
Article
CAS
Google Scholar
Kamvar ZN, Tabima JF, Grunwald NJ. Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction. PeerJ. 2014;2:e281.
Article
Google Scholar
Bruvo R, Michiels NK, D’Souza TG, Schulenburg H. A simple method for the calculation of microsatellite genotype distances irrespective of ploidy level. Mol Ecol. 2004;13(7):2101–6.
Article
CAS
Google Scholar
Mellado E, Garcia-Effron G, Alcázar-Fuoli L, Melchers W, Verweij PE, Cuenca-Estrella M, Rodríguez-Tudela JL. A new Aspergillus fumigatus resistance mechanism conferring in-vitro cross-resistance to azole antifungals involves a combination of cyp51A alterations. Antimicrob Agents Chemother. 2007;51(6):1897–904.
Article
CAS
Google Scholar
Mowat E, Lang S, Williams C, McCulloch E, Jones B, Ramage G. Phase-dependent antifungal activity against Aspergillus fumigatus developing multicellular filamentous biofilms. J Antimicrob Chemother. 2008;62(6):1281–4.
Article
CAS
Google Scholar
Verweij PE, Zhang J, Debets AJM, Meis JF, Schoustra SE, van de Veerdonk FL, Zwaan BJ, Melchers WJG. In-host adaptation and acquired triazole resistance in Aspergillus fumigatus: a dilemma for clinical management. Lancet Infect Dis. 2016;16(11):e260.
Article
Google Scholar
Ballad E, Melchers W, Zoll J, Brown A, Verweij PE, Warris A. In-host microevolution of Aspergillus fumigatus: a phenotypic and genotypic analysis. Fungal Genet Biol. 2018;113:1.
Article
Google Scholar
Paisley D, Robson GD, Denning DW. Correlation between in vitro growth rate and in vivo virulence in Aspergillus fumigatus. Med Mycol. 2005;43(5):397–401.
Article
Google Scholar
Peeters D, Day MJ, Clercx C. An immunohistochemical study of canine nasal aspergillosis. J Comp Pathol. 2005;132(4):283–8.
Article
CAS
Google Scholar
de Valk HA, Meis JF, de Pauw BE, Donnelly PJ, Klaassen CH. Comparison of two highly discriminatory molecular fingerprinting assays for analysis of multiple Aspergillus fumigatus isolates from patients with invasive aspergillosis. J Clin Microbiol. 2007;45(5):1415–9.
Article
CAS
Google Scholar
Howard SJ, Pasqualotto AC, Anderson MJ, Leatherbarrow H, Albarrag AM, Harrison E, Gregson L, Bowyer P, Denning DW. Major variations in Aspergillus fumigatus arising within aspergillomas in chronic pulmonary aspergillosis. Mycoses. 2013;56(4):434–41.
Article
CAS
Google Scholar
Escribano P, Peláez T, Bouza E, Guinea J. Microsatellite (STRAf) genotyping cannot differentiate between invasive and colonizing Aspergillus fumigatus isolates. J Clin Microbiol. 2015;53(2):667–70.
Article
Google Scholar
Verweij PE, Chowdhary A, Melchers WJ, Meis JF. Azole resistance in Aspergillus fumigatus: can we retain the clinical use of mold-active antifungal azoles? Clin Infect Dis. 2016;62(3):362–8.
Article
CAS
Google Scholar
van Ingen J, van der Lee HA, Rijs TA, Zoll GJ, Leenstra T, Melchers WJG, Verweij PE. Azole, polyene and echinocandin MIC distributions for wild-type, TR34/L98H and TR46/Y121F/T289A Aspergillus fumigatus isolates in the Netherlands. J Antimicrob Chemother. 2015;70(1):178–81.
Article
CAS
Google Scholar
Jensen RH, Hagen F, Astvad KMT, Tyron A, Meis JF, Arendrup MC. Azole-resistant Aspergillus fumigatus in Denmark: a laboratory-based study on resistance mechanisms and genotypes. Clin Microbiol Infect. 2016;22(6):570.e9.
Article
Google Scholar
Klaassen CH, Gibbons JG, Fedorova ND, Meis JFGM, Rokas A. Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus. Mol Ecol. 2012;21(1):57–70.
Article
Google Scholar
Chowdhary A, Meis JF. Emergence of azole resistant Aspergillus fumigatus and one health: time to implement environmental stewardship. Environ Microbiol. 2018;20:1299.
Article
Google Scholar
Abdolrasouli A, Rhodes J, Beale MA, Hagen F, Rogers TR, Chowdhary A, Meis JF, Armstrong-James D, Fisher MC. Genomic context of azole resistance mutations in Aspergillus fumigatus determined using whole-genome sequencing. MBio. 2015;6(3):536.
Article
Google Scholar
de Aldana CR, Vazquez LA, Fraser C, Lu C, Fosker N, Tekaia F, Saunders D, Kitamoto K, Murphy L, Haas B, Lafton A, Bennett J, Fischer R, Huang J, Barrell B, Fraser A, Molina M, Sanchez M, O'Neil S, Feldblyum TV, García MJ, Woodward J, Keller N, Pain A, García JL, Price C, Rawlins N, Yu J, Goldman GH, Quail MA, Kumagai T, Berriman M, Renauld H, Asai K, Mohamoud Y, Konzack S, Machida M, Hall N, Collins M, Majoros WH, Kulkarni R, Mulligan S, Robson GD, Jiménez J, Arroyo J, Horiuchi H, Ronning CM, Gomi K, Pertea M, Coulsen R, Harris D, Fedorova N, White O, Haas H, Turner G, Paulsen I, Galagan JE, Archer DB, Griffith-Jones S, Denning DW, Miller BL, Sánchez-Ferrero JC, Seeger K, Chen D, May GS, Gwilliam R, Goble A, Monod M, Abe K, Takeuchi M, Peñalva MA, Kobayashi T, Fedorova N, Farman M, Li W, Kim HS, Nierman WC, Weidman J, Pritchard BL, Mouyna I, Bowyer P, Squares S, Khouri H, de Córdoba SR, Davies R, Dyer PS, Latgé J, Bermejo C, Rodríguez-Peña JM, Rutter S, Wortman JR, Humphray S, Rabbinowitsch E, Squares R, Anderson MJ, Reichard U, Salzberg SL, Rajandream M. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature. 2005;438(7071):1151–6.
Article
Google Scholar
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet. 2008;4(4):e1000046.
Article
Google Scholar
Hong S, Go S, Shin H, Frisvad JC, Samson RA. Polyphasic taxonomy of Aspergillus fumigatus and related species. Mycologia. 2005;97(6):1316–29.
Article
CAS
Google Scholar
Glass NL, Donaldson GC. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microbiol. 1995;61(4):1323–30.
CAS
PubMed
PubMed Central
Google Scholar