Baker GC, Gaffar S, Cowan DA, Suharto AR: Bacterial community analysis of Indonesian hot springs. FEMS Microbiol Lett. 2001, 200 (1): 103-109. 10.1111/j.1574-6968.2001.tb10700.x.
Article
CAS
PubMed
Google Scholar
Eiler A, Bertilsson S: Flavobacteria blooms in four eutrophic lakes: linking population dynamics of freshwater bacterioplankton to resource availability. Appl Environ Microbiol. 2007, 73 (11): 3511-3518. 10.1128/AEM.02534-06.
Article
PubMed Central
CAS
PubMed
Google Scholar
Peeters K, Willems A: The gyrB gene is a useful phylogenetic marker for exploring the diversity of Flavobacterium strains isolated from terrestrial and aquatic habitats in Antarctica. FEMS Microbiol Lett. 2011, 321 (2): 130-140. 10.1111/j.1574-6968.2011.02326.x.
Article
CAS
PubMed
Google Scholar
Barnes ME, Brown ML: A review of Flavobacterium psychrophilum biology, clinical signs, and Bacterial Cold Water Disease prevention and treatment. Open Fish Sci J. 2011, 4: 1-9.
Article
Google Scholar
Bernardet JF, Kerouault B: Phenotypic and genomic studies of “Cytophaga psychrophila” isolated from diseased rainbow trout (Oncorhynchus mykiss) in France. Appl Environ Microbiol. 1989, 55 (7): 1796-1800.
PubMed Central
CAS
PubMed
Google Scholar
Hesami S, Allen KJ, Metcalf D, Ostland VE, MacInnes JI, Lumsden JS: Phenotypic and genotypic analysis of Flavobacterium psychrophilum isolates from Ontario salmonids with bacterial coldwater disease. Can J Microbiol. 2008, 54 (8): 619-629. 10.1139/W08-058.
Article
CAS
PubMed
Google Scholar
Madetoja J, Dalsgaard I, Wiklund T: Occurrence of Flavobacterium psychrophilum in fish-farming environments. Dis Aquat Organ. 2002, 52 (2): 109-118.
Article
Google Scholar
Valdebenito S, Avendano-Herrera R: Phenotypic, serological and genetic characterization of Flavobacterium psychrophilum strains isolated from salmonids in Chile. J Fish Dis. 2009, 32 (4): 321-333. 10.1111/j.1365-2761.2008.00996.x.
Article
CAS
PubMed
Google Scholar
Wakabayashi H, Huh GJ, Kimura N: Flavobacterium branchiophila sp. nov., a causative agent of Bacterial Gill Disease of freshwater fishes. Int J Syst Bacteriol. 1989, 39 (3): 213-216. 10.1099/00207713-39-3-213.
Article
Google Scholar
Nematollahi A, Decostere A, Pasmans F, Haesebrouck F: Flavobacterium psychrophilum infections in salmonid fish. J Fish Dis. 2003, 26 (10): 563-574. 10.1046/j.1365-2761.2003.00488.x.
Article
CAS
PubMed
Google Scholar
Anderson JI, Conroy DA: The pathogenic myxobacteria with special reference to fish diseases. J appl Bact. 1969, 32: 30-39. 10.1111/j.1365-2672.1969.tb02186.x.
Article
CAS
Google Scholar
Carlson RV, Pacha RE: Procedure for the isolation and enumeration of myxobacteria from aquatic habitats. Appl Microbiol. 1968, 16 (5): 795-796.
PubMed Central
CAS
PubMed
Google Scholar
Lehmann J, Mock D, Stürenberg FJ, Bernardet JF: First isolation of Cytophaga psychrophila from a systemic disease in eel and cyprinids. Dis Aquat Organ. 1991, 10: 217-220.
Article
Google Scholar
Pacha RE: Characteristics of Cytophaga psychrophila (Borg) isolated during outbreaks of bacterial cold-water disease. Appl Microbiol. 1968, 16 (1): 97-101.
PubMed Central
CAS
PubMed
Google Scholar
Rangdale RE, Richards RE, Alderman DJ: Isolation of Cytophaga psychrophila, causal agent of rainbow trout fry syndrome (RTFS) from reproductive fluids and egg surfaces of rainbow trout (Oncorhynchus mykiss). Bull Eur Ass Fish Pathol. 1996, 16 (2): 63-
Google Scholar
Strepparava N, Wahli T, Segner H, Polli B, Petrini O: Fluorescent in situ Hybridization: a new tool for the direct identification and detection of F. psychrophilum. PLoS One. 2012, In Press
Google Scholar
Langendijk PS, Schut F, Jansen GJ, Raangs GC, Kamphuis GR, Wilkinson MH, Welling GW: Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. Appl Environ Microbiol. 1995, 61 (8): 3069-3075.
PubMed Central
CAS
PubMed
Google Scholar
Madetoja J, Wiklund T: Detection of the fish pathogen Flavobacterium psychrophilum in water from fish farms. Syst Appl Microbiol. 2002, 25 (2): 259-266. 10.1078/0723-2020-00105.
Article
CAS
PubMed
Google Scholar
Wiklund T, Madsen L, Bruun MS, Dalsgaard I: Detection of Flavobacterium psychrophilum from fish tissue and water samples by PCR amplification. J Appl Microbiol. 2000, 88 (2): 299-307. 10.1046/j.1365-2672.2000.00959.x.
Article
CAS
PubMed
Google Scholar
Altinok I, Capkin E, Kayis S: Development of multiplex PCR assay for simultaneous detection of five bacterial fish pathogens. Vet Microbiol. 2008, 131 (3–4): 332-338.
Article
CAS
PubMed
Google Scholar
Del Cerro A, Marquez I, Guijarro JA: Simultaneous detection of Aeromonas salmonicida, Flavobacterium psychrophilum, and Yersinia ruckeri, three major fish pathogens, by multiplex PCR. Appl Environ Microbiol. 2002, 68 (10): 5177-5180. 10.1128/AEM.68.10.5177-5180.2002.
Article
PubMed Central
CAS
PubMed
Google Scholar
Carelli G, Decaro N, Lorusso A, Elia G, Lorusso E, Mari V, Ceci L, Buonavoglia C: Detection and quantification of Anaplasma marginale DNA in blood samples of cattle by real-time PCR. Vet Microbiol. 2007, 124 (1–2): 107-114.
Article
CAS
PubMed
Google Scholar
Lewin SR, Vesanen M, Kostrikis L, Hurley A, Duran M, Zhang L, Ho DD, Markowitz M: Use of real-time PCR and molecular beacons to detect virus replication in human immunodeficiency virus type 1-infected individuals on prolonged effective antiretroviral therapy. J Virol. 1999, 73 (7): 6099-6103.
PubMed Central
CAS
PubMed
Google Scholar
Trombley AR, Wachter L, Garrison J, Buckley-Beason VA, Jahrling J, Hensley LE, Schoepp RJ, Norwood DA, Goba A, Fair JN, Kulesh DA: Comprehensive panel of real-time TaqMan polymerase chain reaction assays for detection and absolute quantification of filoviruses, arenaviruses, and New World hantaviruses. Am J Trop Med Hyg. 2010, 82 (5): 954-960. 10.4269/ajtmh.2010.09-0636.
Article
PubMed Central
CAS
PubMed
Google Scholar
Marancik DP, Wiens GD: A real-time polymerase chain reaction assay for identification and quantification of Flavobacterium psychrophilum and application to disease resistance studies in selectively bred rainbow trout Oncorhynchus mykiss. FEMS Microbiol Lett. 2013, 339 (2): 122-129. 10.1111/1574-6968.12061.
Article
CAS
PubMed
Google Scholar
Orieux N, Bourdineaud JP, Douet DG, Daniel P, Le Henaff M: Quantification of Flavobacterium psychrophilum in rainbow trout, Oncorhynchus mykiss (Walbaum), tissues by qPCR. J Fish Dis. 2011, 34 (11): 811-821. 10.1111/j.1365-2761.2011.01296.x.
Article
CAS
PubMed
Google Scholar
Chelo IM, Ze-Ze L, Tenreiro R: Congruence of evolutionary relationships inside the Leuconostoc-Oenococcus-Weissella clade assessed by phylogenetic analysis of the 16S rRNA gene, dnaA, gyrB, rpoC and dnaK. Int J Syst Evol Microbiol. 2007, 57 (Pt 2): 276-286.
Article
CAS
PubMed
Google Scholar
Mittenhuber G: Comparative genomics and evolution of genes encoding bacterial (p)ppGpp synthetases/hydrolases (the Rel, RelA and SpoT proteins). J Mol Microbiol Biotechnol. 2001, 3 (4): 585-600.
CAS
PubMed
Google Scholar
Morse R, Collins MD, O’Hanlon K, Wallbanks S, Richardson PT: Analysis of the beta’ subunit of DNA-dependent RNA polymerase does not support the hypothesis inferred from 16S rRNA analysis that Oenococcus oeni (formerly Leuconostoc oenos) is a tachytelic (fast-evolving) bacterium. Int J Syst Bacteriol. 1996, 46 (4): 1004-1009. 10.1099/00207713-46-4-1004.
Article
CAS
PubMed
Google Scholar
Duchaud E, Boussaha M, Loux V, Bernardet JF, Michel C, Kerouault B, Mondot S, Nicolas P, Bossy R, Caron C, Bessieres P, Gibrat JF, Claverol S, Dumetz F, Le Henaff M, Benmansour A: Complete genome sequence of the fish pathogen Flavobacterium psychrophilum. Nat Biotechnol. 2007, 25 (7): 763-769. 10.1038/nbt1313.
Article
CAS
PubMed
Google Scholar
Morillo JM, Lau L, Sanz M, Herrera D, Silva A: Quantitative real-time PCR based on single copy gene sequence for detection of Actinobacillus actinomycetemcomitans and Porphyromonas gingivalis. J Periodontal Res. 2003, 38 (5): 518-524. 10.1034/j.1600-0765.2003.00684.x.
Article
CAS
PubMed
Google Scholar
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL, Vandesompele J, Wittwer CT: The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem. 2009, 55 (4): 611-622. 10.1373/clinchem.2008.112797.
Article
CAS
PubMed
Google Scholar
Barbier P, Houel A, Loux V, Poulain J, Bernardet JF, Touchon M, Duchaud E: Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water. J Bacteriol. 2012, 194 (11): 3024-3025. 10.1128/JB.00420-12.
Article
PubMed Central
CAS
PubMed
Google Scholar
McBride MJ, Xie G, Martens EC, Lapidus A, Henrissat B, Rhodes RG, Goltsman E, Wang W, Xu J, Hunnicutt DW, Staroscik AM, Hoover TR, Cheng YO, Stein JL: Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009, 75 (21): 6864-6875. 10.1128/AEM.01495-09.
Article
PubMed Central
CAS
PubMed
Google Scholar
Tekedar HC, Karsi A, Gillaspy AF, Dyer DW, Benton NR, Zaitshik J, Vamenta S, Banes MM, Gulsoy N, Aboko-Cole M, Waldbieser GC, Lawrence ML: Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512. J Bacteriol. 2012, 194 (10): 2763-2764. 10.1128/JB.00281-12.
Article
PubMed Central
CAS
PubMed
Google Scholar
Touchon M, Barbier P, Bernardet JF, Loux V, Vacherie B, Barbe V, Rocha EP, Duchaud E: Complete genome sequence of the fish pathogen Flavobacterium branchiophilum. Appl Environ Microbiol. 2011, 77 (21): 7656-7662. 10.1128/AEM.05625-11.
Article
PubMed Central
CAS
PubMed
Google Scholar
Nematollahi A, Decostere A, Pasmans F, Ducatelle R, Haesebrouck F: Adhesion of high and low virulence Flavobacterium psychrophilum strains to isolated gill arches of rainbow trout Oncorhynchus mykiss. Dis Aquat Organ. 2003, 55 (2): 101-107.
Article
PubMed
Google Scholar
Brown LL, Cox WT, Levine PL: Evidence that the causal agent of bacterial cold-water disease Flavobacterium psychrophilum is transmittes within salmonid eggs. Dis Aquat Organ. 1997, 29: 213-218.
Article
Google Scholar
McCormick A, Loeffler J, Ebel F: Aspergillus fumigatus: contours of an opportunistic human pathogen. Cell Microbiol. 2010, 12 (11): 1535-1543. 10.1111/j.1462-5822.2010.01517.x.
Article
CAS
PubMed
Google Scholar
Miceli MH, Diaz JA, Lee SA: Emerging opportunistic yeast infections. Lancet Infect Dis. 2011, 11 (2): 142-151. 10.1016/S1473-3099(10)70218-8.
Article
PubMed
Google Scholar
Morgan AL, Thompson KD, Auchinachie NA, Migaud H: The effect of seasonality on normal haematological and innate immune parameters of rainbow trout Oncorhynchus mykiss L. Fish Shellfish Immunol. 2008, 25 (6): 791-799. 10.1016/j.fsi.2008.05.011.
Article
CAS
PubMed
Google Scholar
Banks JL: Raceway density and water flow as factors affecting spring chinook salmon (Oncorhynchus tshawytscha) during rearing and after release. Aquaculture. 1994, 119 (2–3): 201-217.
Article
Google Scholar
Karvonen A, Rintamaki P, Jokela J, Valtonen ET: Increasing water temperature and disease risks in aquatic systems: climate change increases the risk of some, but not all, diseases. Int J Parasitol. 2010, 40 (13): 1483-1488. 10.1016/j.ijpara.2010.04.015.
Article
PubMed
Google Scholar
Pulkkinen K, Suomalainen LR, Read AF, Ebert D, Rintamaki P, Valtonen ET: Intensive fish farming and the evolution of pathogen virulence: the case of columnaris disease in Finland. Proc Biol Sci. 2010, 277 (1681): 593-600. 10.1098/rspb.2009.1659.
Article
PubMed Central
CAS
PubMed
Google Scholar
Suomalainen LR, Tiirola MA, Valtonen ET: Influence of rearing conditions on Flavobacterium columnare infection of rainbow trout, Oncorhynchus mykiss (Walbaum). J Fish Dis. 2005, 28 (5): 271-277. 10.1111/j.1365-2761.2005.00631.x.
Article
PubMed
Google Scholar
Lorenzen E, Olesen NJ: Characterization of isolates of Flavobacterium psychrophilum associated with coldwater disease or rainbow trout fry syndrome II: serological studies. Dis Aquat Organ. 1997, 31: 209-220.
Article
Google Scholar
Green DM, Gregory A, Munro LA: Small- and large-scale network structure of live fish movements in Scotland. Prev Vet Med. 2009, 91 (2–4): 261-269.
Article
PubMed
Google Scholar
Tonolla M, Peduzzi S, Hahn D, Peduzzi R: Spatio-temporal distribution of phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno (Switzerland). FEMS Microbiol Ecol. 2003, 43 (1): 89-98. 10.1111/j.1574-6941.2003.tb01048.x.
Article
CAS
PubMed
Google Scholar
Griffiths E, Gupta RS: Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales. Int Microbiol. 2004, 7 (1): 41-52.
CAS
PubMed
Google Scholar
Yamamoto S, Harayama S: PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol. 1995, 61 (10): 3768-
PubMed Central
CAS
PubMed
Google Scholar
Tamura K, Dudley J, Nei M, Kumar S: MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 2007, 24 (8): 1596-1599. 10.1093/molbev/msm092.
Article
CAS
PubMed
Google Scholar
Bikandi J, San Millan R, Rementeria A, Garaizar J: In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction. Bioinformatics. 2004, 20 (5): 798-799. 10.1093/bioinformatics/btg491.
Article
CAS
PubMed
Google Scholar
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215 (3): 403-410. 10.1016/S0022-2836(05)80360-2.
Article
CAS
PubMed
Google Scholar
Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J: qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 2007, 8 (2): R19-10.1186/gb-2007-8-2-r19.
Article
PubMed Central
PubMed
Google Scholar
Mackay IM: Real-time PCR in the microbiology laboratory. Clin Microbiol Infect. 2004, 10 (3): 190-212. 10.1111/j.1198-743X.2004.00722.x.
Article
CAS
PubMed
Google Scholar
Yun JJ, Heisler LE, Hwang II, Wilkins O, Lau SK, Hyrcza M, Jayabalasingham B, Jin J, McLaurin J, Tsao MS, Der SD: Genomic DNA functions as a universal external standard in quantitative real-time PCR. Nucleic Acids Res. 2006, 34 (12): e85-10.1093/nar/gkl400.
Article
PubMed Central
PubMed
Google Scholar
Joly P, Falconnet PA, Andre J, Weill N, Reyrolle M, Vandenesch F, Maurin M, Etienne J, Jarraud S: Quantitative real-time Legionella PCR for environmental water samples: data interpretation. Appl Environ Microbiol. 2006, 72 (4): 2801-2808. 10.1128/AEM.72.4.2801-2808.2006.
Article
PubMed Central
CAS
PubMed
Google Scholar