- Research article
- Open Access
The in vivo efficacy of two administration routes of a phage cocktail to reduce numbers of Campylobacter coli and Campylobacter jejuni in chickens
BMC Microbiology volume 10, Article number: 232 (2010)
Poultry meat is one of the most important sources of human campylobacteriosis, an acute bacterial enteritis which is a major problem worldwide. Campylobacter coli and Campylobacter jejuni are the most common Campylobacter species associated with this disease. These pathogens live in the intestinal tract of most avian species and under commercial conditions they spread rapidly to infect a high proportion of the flock, which makes their treatment and prevention very difficult. Bacteriophages (phages) are naturally occurring predators of bacteria with high specificity and also the capacity to evolve to overcome bacterial resistance. Therefore phage therapy is a promising alternative to antibiotics in animal production. This study tested the efficacy of a phage cocktail composed of three phages for the control of poultry infected with C. coli and C. jejuni. Moreover, it evaluated the effectiveness of two routes of phage administration (by oral gavage and in feed) in order to provide additional information regarding their future use in a poultry unit.
The results indicate that experimental colonisation of chicks was successful and that the birds showed no signs of disease even at the highest dose of Campylobacter administered. The phage cocktail was able to reduce the titre of both C. coli and C. jejuni in faeces by approximately 2 log10 cfu/g when administered by oral gavage and in feed. This reduction persisted throughout the experimental period and neither pathogen regained their former numbers. The reduction in Campylobacter titre was achieved earlier (2 days post-phage administration) when the phage cocktail was incorporated in the birds' feed. Campylobacter strains resistant to phage infection were recovered from phage-treated chickens at a frequency of 13%. These resistant phenotypes did not exhibit a reduced ability to colonize the chicken guts and did not revert to sensitive types.
Our findings provide further evidence of the efficacy of phage therapy for the control of Campylobacter in poultry. The broad host range of the novel phage cocktail enabled it to target both C. jejuni and C. coli strains. Moreover the reduction of Campylobacter by approximately 2 log10cfu/g, as occurred in our study, could lead to a 30-fold reduction in the incidence of campylobacteriosis associated with consumption of chicken meals (according to mathematical models). To our knowledge this is the first report of phage being administered in feed to Campylobacter- infected chicks and our results show that it lead to an earlier and more sustainable reduction of Campylobacter than administration by oral gavage. Therefore the present study is of extreme importance as it has shown that administering phages to poultry via the food could be successful on a commercial scale.
Worldwide, Campylobacter is recognized as the major etiologic agent in bacterial human diarrheoal disease [1–4]. Poultry, particularly chickens, account for the majority of human infections caused by Campylobacter [5, 6]: Campylobacter jejuni and Campylobacter coli are the most prevalent species [2, 7, 8]. Surveys in Europe revealed that the prevalence of Campylobacter-positive poultry flocks varies from 18 to 90%, with the northernmost countries having substantially lower figures than southern European countries . In the United States a survey indicated that nearly 90% of flocks were colonized . The prevention of Campylobacter colonization has proven to be difficult  and therefore control of Campylobacter in poultry is an especially demanding goal to attain.
Campylobacter is commonly found in the gastrointestinal tract of poultry, where it replicates and colonises rapidly, even from very low inoculums [2, 12]. When introduced into a flock, infection spreads rapidly by environmental contamination and coprophagy . The problem of Campylobacter contamination of poultry is exacerbated following slaughter by cross-contamination from Campylobacter-positive to Campylobacter-negative carcasses during processing in the abattoir , showing that standard biosecurity measures on the processing plant are ineffective . Even if it were possible to reduce the level of carcass contamination, such measures would be costly, difficult to maintain and restrictive. Consequently, another strategy is to operate control measures on the farm and thus significantly reduce colonization with Campylobacter prior to slaughter. As yet this has been difficult to achieve: strategies that successfully reduced Salmonella in broilers have proved to be only partially effective or totally ineffective in the control of Campylobacter colonization. These approaches include the treatment of feed with acid additives , vaccination of breeders [16, 17] and competitive exclusion [18, 19].
Due to increasing levels of antibiotic resistance in bacteria, the European Union has phased out the preventative use of antibiotics in food production . Therefore, there is a pressing need to find alternatives to antibiotics that can be used to reduce the numbers of pathogens in animal products.
Bacteriophages are natural predators of bacteria, ubiquitous in the environment, self-limiting and self-replicating in their target bacterial cell . Their high host-specificity and their capacity to evolve to overcome bacterial resistance  make them a promising alternative to antibiotics in animal production. There are several scientific studies on the use of phages to control animal diseases, namely those caused by Salmonella and E. coli [11, 23–26]. Campylobacter phages have been isolated from several different sources such as sewage, pig and poultry manure, abattoir effluents, broiler chickens and retail poultry [27–35]. It has been demonstrated that they can survive on fresh and frozen retail poultry products . Moreover they can exhibit a control effect on Campylobacter numbers, even in the absence of host growth, which is explained by the fact that some phages adsorb to the surface of the bacteria and just replicate when the metabolic activity of bacterium increases . These make them potentially an important biocontrol agent of foodborne diseases.
The present study was undertaken to test the efficacy of a phage cocktail in reducing the levels of colonization by both C. coli and C. jejuni in broiler birds. In order to accomplish this task, experimental models of Campylobacter infection were designed and evaluated prior to the in vivo phage experiments. Moreover the best method of administering the phage cocktail was determined in order to ensure a high and consistent reduction in Campylobacter colonization. A further objective of this study was to evaluate the in vivo acquisition of phage resistance.
The phage cocktail used in the present study was composed of three phages (phiCcoIBB35, phiCcoIBB37, phiCcoIBB12) previously isolated from poultry intestinal contents and selected on the basis of their broad lytic spectra against food and clinical C. coli and C. jejuni strains . The three phages showed different and complementary lytic spectra . They were morphologically, genetically and physiologically characterized by transmission electron microscopy (TEM), pulsed field gel electrophoresis (PFGE), restriction fragment length polymorphism (RFLP) and single-step growth experiments. Morphologically the three phages have a similar structure and size, each possessing an icosahedral head (average diameter of 100 nm) and a contractile tail (140 × 17 nm average length) with tail fibres at the distal end. These morphologies are typical of the Myoviridae family of lytic phages . Electron micrographs are presented in Figure 1. PFGE and RFLP experiments showed each of the three phages to have a genomic DNA size of approximately 200 kb that was not cut by any of the restriction enzymes tested. Single-step growth curves results (Figure 2) showed that the burst size of phage phiCcoIBB35 was 24 pfu with a latent period of 52.5 min; the burst size of phage phiCcoIBB37 was 9 pfu with a latent period of 67.5 min and the burst size of phage phiCcoIBB12 was 22 pfu with a latent period of 82.5 min.
Campylobacter colonization models
Prior to testing the phage efficacy in vivo it was necessary to determine the optimum dose of Campylobacter needed to produce consistent Campylobacter levels in faeces. The essential parameters of the infection model were therefore set to mimic natural Campylobacter colonisation: the colonisation level to be between 1 × 106 and 1 × 109cfu/g of faeces, the number found in commercial broiler flocks , and the birds should be asymptomatic. The C. jejuni 2140CD1 numbers presented in Figure 3 show that the geometric mean colonisation level at three days post-infection (dpi) was lower than at subsequent sampling points. The logarithmic mean colonisation levels, excluding 3dpi, were 2.2, 1.1, and 5.8 × 106cfu/g for the low, medium and high dose groups respectively and the standard error of the mean was approximately 0.3 cfu/g. The primary reason for the lower mean in the 3dpi sample point was that within each group some of the samples were negative for C. jejuni 2140CD1, which reduced the mean levels: four out of seven birds in the low dose group, one out of seven birds in the medium dose group and three out of seven birds in the high dose group were negative. These negative samples were represented by birds that were not colonized or birds which the Campylobacter numbers in faecal samples was inferior to the detection limit (500 cfu/g). Similar experiments were performed to establish the colonization model for the C. coli strain used in this study (C. coli A11) and a consistent number of 1.7 × 106cfu/g bacterial cells was found in the faeces of the birds after 7dpi.
Phage cocktail administration
Prior to the phage cocktail administration experiments, all birds were screened for phages active against the inoculum Campylobacter and proved to be negative.
In a preliminary experiment (data not shown), the phage cocktail was administrated by oral gavage to one-week old chicks infected with C. jejuni 2140CD1. The faecal samples collected at all sample time points presented Campylobacter but did not contain any of the phages administered. This suggested that the phages might have been sensitive to low pH such as occurs during passage through the proventriculus and gizzard. The use of an antacid has been demonstrated to improve the ability of phages to survive low acidity in the digestive system  and therefore in the following trials (Experiment 1 and Experiment 2) the phage cocktail was administered with CaCO3.
In Experiments 1 and 2 the results show that the numbers of Campylobacter in the control group were stable throughout the experiments (no statistically significant difference), which shows that the birds were well colonized. Moreover the fact that the treated groups and the untreated groups had the same level of Campylobacter colonization at the beginning of the experiments ensures that accurate comparisons between these two groups can be made.
In Experiment 1, the phage cocktail was administered by oral gavage to one-week old chicks infected with C. jejuni 2140CD1. In order to determine the best phage delivery policy, in Experiment 2 a comparison was made of administering the phage cocktail by oral gavage and by incorporating it into the chicks' food, using chicks infected with C. coli A11.
For Experiments 1 and 2, the data show a reduction in the number of Campylobacter in the chicks that received the phage cocktail when compared to the chicks from the untreated group (control group) which received only antacid (Figures 4 and 5 respectively). The log10cfu/g difference between these groups is presented in Table 1. After phage administration, the colonization values from the chicks belonging to the treated groups were lower than the values from the chicks that received no treatment (control group). In fact, using one-way ANOVA, it can be said that each value of Campylobacter counts from the treated and the control group was statistically significant different (P < 0.05) during the experimental period. In Experiment 1, at four days post-phage administration (4 dpa) it was already possible to see a reduction of 2.34 log10 cfu/g in the numbers of C. jejuni 2140CD1 when comparing the untreated and treated groups. This reduction was consistent through the experiment and at 7 dpa it was 2.18 log10cfu/g. In Experiment 2 the results show that phage cocktail delivered by food was effective and resulted in a slightly higher reduction (approximately 2 log10 cfu/g) in pathogen numbers than the phage cocktail administered by oral gavage (1.7 log10 cfu/g reduction), when compared to the untreated group at the end of the experimental period (7 dpa). However a reduction of 2 log10 cfu/g in Campylobacter numbers in faeces was already observed at 2 dpa when the phage cocktail was given by food, while at this time point the reduction was only 1.25 log10 cfu/g in the faecal samples of the group that received the phage cocktail by oral gavage. We believe that this trial was not compromised by the pecking order of the chickens because the birds were observed during the trial in order to assure that all of them had eaten. Moreover the low value of the standard error (0.2 pfu/g) of the phage titer after two days of treatment demonstrated that there were small variations in the dose of phage that each bird received.
The phage titers from faecal samples of the chicks infected with C. jejuni and C. coli were log10 5.3 pfu/g and log10 3.4 pfu/g for Experiment 1 and Experiment 2 respectively. These values remained approximately constant throughout the experimental period showing that phages delivered to chicks (either by oral gavage or in feed) were able to replicate and therefore able to reduce the Campylobacter populations.
Previous studies [40, 41] have used the number of Campylobacter in the caecal contents of the birds as a measure of Campylobacter colonisation levels in the GI tract of chickens [41, 34]. Although this may be a representative of colonisation levels, the animals must be killed and dissected to obtain the sample. This can lead to the use of an excessive number of birds when multiple time points are required to evaluate phage levels over the lifetime of the bird. Therefore in the present study cloacal swabs were used to determine colonisation levels as they can provide a rough estimate of the numbers of bacteria in the cecum of chickens . Moreover these samples show the kinetics of colonization as multiple samples can be taken from single birds. Another advantage is that it represents the number of Campylobacter being released from the bird into the environment and so directly correlates to the capacity of the bird to transmit the bacteria.
In vivo acquisition of phage resistance
In order to evaluate the acquisition of resistance to the phage cocktail in Campylobacter jejuni infected and treated birds, a total of 300 Campylobacter colonies, isolated from each infected bird belonging to the treated group in Experiment 1, were checked for their sensitivity to the phage cocktail, before and after phage administration. We observed that before phage treatment, 6% of the isolated colonies were resistant to the phage and at 7 dpa 13% of the isolated colonies were phage resistant. Although the results from these experiments are not easily interpreted because bacteria that had not been exposed to phage already demonstrated a certain degree of phage resistance, the key conclusion is that the resistant phenotype could have been selected for during therapy. If that was the case, then the resistant phenotype would soon become the dominant phenotype after therapy began. This may be connected to previous observations that resistant bacteria lose fitness and are out-competed by the non-resistant phenotype in the intestines, despite being sensitive to the phage that is present . To test this hypothesis seven groups of 15 birds were inoculated with phage-sensitive and phage-resistant Campylobacter strains re-isolated from birds used in the previous trial. The numbers of Campylobacter in faeces from each bird was enumerated at seven days post-inoculation (Table 2). There was no significant difference between any of the groups (P > 0.05 by t-test). This suggests that the resistant phenotype was not hindering the ability of the Campylobacter to colonise the chickens. However it may have been the case that in vivo the resistant phenotype was rapidly lost so no lack of fitness was evident. In order to test this hypothesis we randomly selected three Campylobacter colonies from faecal samples from each infected chicken of each of the groups and determined their sensitivity to the phage cocktail (Table 2). Interestingly, 86.2% of the colonies isolated from chickens infected with resistant strains isolated before phage treatment lost their resistant phenotype and 54% of the resistant strains isolated in phage treated chickens reverted their resistant phenotype to a sensitive one. These results are not in accordance with Loc Carrillo et al.  in which 97% of resistant phenotype reverted back to phage sensitive strains.
The characterization of the three Campylobacter phages that compose the cocktail is in accordance with the majority of Campylobacter phages reported in the literature [29, 31, 34, 40, 43, 44]. The only restriction enzyme that has been used successfully to digest the DNA of some Campylobacter phages is Hha I, but even this enzyme did not yield results for the phages used in the present study. Possible explanations for these results include: the phage genomes may have lost restriction sites due to selective pressures from restriction modification systems; the phage genomes may have encoded nucleotide-modifying enzymes such as methyltransferases that would have modified the bases at the restriction sites; the phage genomes may contain unusual bases. Further studies such as phage genome sequencing would be needed in order to understand the refractory nature of the DNA of the Campylobacter phages.
To our knowledge there is just one report in the literature where the burst size and latent period parameters were calculated for Campylobacter phages, i.e. 1.957 virions per cell and 1.312 h respectively . The phages phiCcoIBB35, phiCcoIBB37 and phiCcoIBB12 that were used in the present study have smaller latent periods (52.5 min, 67.5 min and 82.5 min) and higher burst sizes (24, 9 and 22 virions per cell) respectively.
In order to evaluate the efficacy of the three phages in the in vivo trials, it was necessary to recreate experimentally Campylobacter colonization in chicks. The model used revealed a successful colonisation; no birds in any of the groups showed any overt symptoms of disease, colonisation or stress even at the highest dose of Campylobacter administered. This asymptomatic carriage mimics Campylobacter colonisation in commercial flocks. The dose of Campylobacter appeared to have little effect on the outcome of subsequent colonisation levels. The logarithmic mean level of colonisation of the three groups was 2.4 × 106cfu/g, which is within the range of the infection levels found in commercial broiler flocks: 1 × 106 to 1 × 109cfu/g  and hence is an appropriate level for the experimental model. The data shows that Campylobacter had not consistently colonised all the birds by 3dpi. Although the reasons for Campylobacter colonization failure of young birds are still unclear, these negative colonized chickens may have maternal antibodies which protects them from Campylobacter colonization . In all subsequent time points all birds were colonised. This suggests that if a trial is to evaluate the reduction of Campylobacter levels from colonised birds, it is essential to allow time for Campylobacter to become established in the gut of the chicks before phage treatment is initiated. Therefore, in the present study phage treatment was performed after seven days post-infection.
The results of the in vivo trials show that the phage cocktail was able to reduce the number of C. jejuni (Experiment 1) and C. coli (Experiment 2) colonisation in chickens, by approximately 2 log10 cfu/g. Moreover this reduction persisted throughout the experimental period. Other studies [40, 41] produced a similar reduction of Campylobacter counts at the end of the experimental period. However that reduction was of transient nature in comparison to our study, where a sustained reduction in Campylobacter numbers was obtained during the seven days trial. A phage therapy that produces this kind of reduction of a pathogen would probably allow the phage administration to the birds at any point in the production cycle. The advantages of giving the phage early in production would be that environmental contamination would be minimised and that only a proportion of the flock would need treating as the phage would be spread naturally in the environment to all birds. However this strategy does carry a risk of resistance emerging and reducing the efficacy of treatment. In fact, Campylobacter strains resistant to phage infection were recovered from phage-treated chickens at a frequency of 13%. However resistance to the phage cocktail was found in Campylobacter in chickens before phage therapy, which means that bacteria can naturally acquire phage resistance. Nevertheless, following phage treatment an increase in the resistant population was observed meaning that phages might have selected for resistant strains. In our results and conversely to results described by Loc Carrillo et al.  the resistant phenotype did not lose the ability to colonise the chicken gut and did not completely revert to sensitive type. This can be pointed out as a major drawback of phage therapy. So, in order to overcome this problem the best strategy of phage administration is a short time before slaughter. Additionally, it is recommended that when selecting the phages that will compose the cocktail an additional criterion should be the ability to infect other phage resistant Campylobacter phenotypes.
In the present study, two phage administration strategies were assessed: oral gavage and food incorporation. Oral gavage permitted the delivery of accurate doses directly to the gastro-intestinal (GI) tract of individual birds. However if phage therapy is to be utilised by the poultry industry then the phage product must be simple and cheap to administer to flocks consisting of several thousand birds. We demonstrated that application of phage therapy can be successfully achieved in food leading to a reduction similar to that achieved by oral gavage. Moreover this reduction was earlier in comparison to the group that received the phage cocktail by oral gavage which can be explained by the protective effect of food that hampers the low pH from inactivating the phages . These results are of extreme importance as this route of phage administration can provide a viable strategy for delivery of phage in a commercial context. Phages could also be given in the drinking water, however preliminary experiments showed that phage needed to be administrated with antacid and this could prove more difficult to deliver with the water than as an inclusion in the feed.
Moreover, in our study the phage cocktail was administered as a single dose to Campylobacter- infected chicks 7dpi. A single dose of phage is, in comparison to multiple doses , an easier and more feasible strategy in a farm situation.
It must be noted that the present model does not comprise all the variables that can play a role in the use of phages to control Campylobacter in poultry. Firstly, this model considers the use of phages as a therapy and not as a prophylactic measure. Secondly, in the present work birds were challenged with Campylobacter at one-year-old, but in a real commercial context birds just get colonized with Campylobacter after two weeks of age. However, these conditions were not tested in our experiments as it is very difficult to maintain chicks free of pathogens. An additional limitation of the model was the limited time course of the experiments (seven days). Nevertheless, the model described herein is a proof of principle that Campylobacter phages given orally or administered in feed can effectively reduce the Campylobacter colonization levels. Further studies need to be undertaken in order to test phage effectiveness in older chickens, their use as prophylactic agents and longer time course trials in order to reflect the production cycle.
The phage cocktail was able to reduce C. coli and C. jejuni in infected poultry by approximately 2 log10cfu/g, which is of great importance as they are the most prevalent Campylobacter species found in positive Campylobacter flocks. Moreover mathematical models indicate that a 2 log10cfu/g reduction of Campylobacter on the chicken carcasses could lead to a 30-fold reduction in the incidence of campylobacteriosis associated with consumption of chicken meals . The phage cocktail administered in feed led to an earlier reduction in Campylobacter titre than when given by oral gavage and thus this method can be easily and successfully used under commercial condition in a poultry unit. Another important aspect of the present study is that as the phages that composed the cocktail were isolated from poultry carcasses, their use to reduce Campylobacter colonisation in the live birds would not introduce any new biological entity into the food chain.
For the single-step growth experiments, two wild type strains of C. coli, isolated from poultry and poultry products, were used as the hosts of the three phages that composed the cocktail (C. coli A11, host of phages phiCcoIBB35 and phiCcoIBB37; C. coli 8907, host of phage phiCcoIBB12). For the animal trials, two Campylobacter strains were chosen: C. coli A11 and C. jejuni 2140CD1 (isolated from chickens in a commercial production unit).
For the phage cocktail, three phages (phiCcoIBB35, phiCcoIBB37, phiCcoIBB12) were selected from a panel of 43 phages, isolated from poultry carcasses, based on their broad lytic spectra against C. coli and C. jejuni strains . These phages were characterized by transmission electron microscopy (TEM), pulsed field gel electrophoresis (PFGE), restriction fragment length polymorphism (RFLP) and single-step-growth experiments.
PEG-purified phage samples were applied for 1 min on glow-discharged 400-mesh Formvar Carbon copper grids (Ted Pella) and blot dried. The grids were stained with 1% uranyl acetate for 1 min. The samples were observed under a JEOL transmission electron microscope at 60 kV and images recorded (Figure 1).
Restriction endonuclease digests was performed using the following enzymes: Hha I, Eco RV, Eco RI, Xba I, Hin dIII, Dde I in accordance to the manufacturer's instructions i.e. 1 h at 37°C (Fermentas Life Sciences). Electrophoresis of the digested DNA was performed at 90 V for 2 h using 1.5% agarose Tris-acetate-EDTA gel.
Burst size and Latent Period (Single-step growth curve)
Single-step growth experiments were performed in order to assess the latent period and burst size of a single round of phage replication. Briefly, host cells were grown to early exponential phase (OD600 nm = 0.3) in 100 ml of NZCYM broth (Sigma Aldrich, Poole, UK) and incubated with shaking at 42°C in a microaerobic atmosphere (5% O2, 5% H2, 10% CO2, 80% N2). They were then infected with the particular phage at a multiplicity of infection (MOI) of 0.001. Samples were taken every 15 min for 4 h and the titre determined immediately by the double-layer agar plate method in NZCYM agar (NZCYM broth with 1% agar (Sigma Aldrich). Three independent replicates of each single-step growth experiment were performed. The mean values obtained from these experiments are presented on Figure 2. The data were fitted to a four-parameter symmetric sigmoid model. Non-linear regression was performed to calculate the latent period and burst size.
The animal experiments were designed to obtain sufficient high quality data to achieve objectives whilst conserving available resources including animals, money, work hours and consumables. Therefore all animal experiments were carried out according to the UK Animals (Scientific procedures) Act 1986 (licence number PPL 30/2322), which stipulates that any experiments on live animals requires a justification of numbers used to ensure that meaningful data is gathered from the least number of animals.
One-day-old Ross broiler chicks (Faccenda, Brackley, UK) were obtained from a commercial hatchery and were housed in a controlled environment in floor boxes under strict biosecurity. Swabs of faecal samples were collected from each individual bird prior to the experiment starting to ensure the absence of any Campylobacter and any phages against the Campylobacter strains which were used for infection. Faecal samples were then pooled in groups of six and 1 g inoculated into 10 ml of Bolton broth (Oxoid, Basingstoke, UK) supplemented with cefaperazone, vancomycin, trimethoprim and cycloheximide (Oxoid) and 5% lysed horse blood (Oxoid). The broths were incubated at 42°C in a microaerobic atmosphere overnight and then plated onto mCCDA (Oxoid) and incubated in the same manner for 48 h. Plates were then checked for growth of Campylobacter. The screen for phages was performed using the 'phage detection using semi-solid agar' methodology detailed below.
Three groups of six birds, designated low, medium and high dose were used: each group received a crop gavage of 0.1 ml of PBS (Sigma) containing respectively 7.5 × 104, 1.0 × 106, or 5.5 × 107cfu of an overnight culture (42°C in microaerobic atmosphere) of C. jejuni strain 2140CD1. Swabs of faecal samples were collected from each individual bird at 3, 7, 10, 14, and 17 dpi (days post-infection). Campylobacter enumeration was performed by serial ten-fold dilutions in SM buffer (0.05 mol/l Tris-HCl [pH 7.5], 0.1 mol/l NaCl, 0.008 mol/l MgSO4) followed by plate counts on mCCDA plates (Oxoid). The same experiments were performed with the C. coli A11, with the exception that only the medium dose of inocula (1.0 × 106cfu) was used to infect the chicks.
Phage cocktail administration
Two animal experiments were conducted. In Experiment 1, thirty one-day-old chicks were inoculated with 1 × 106cfu of C. jejuni 2140CD1 in 0.1 ml PBS by oral gavage and housed together for seven days. One week later faecal samples were collected to screen for phage active against the Campylobacter strain in the inocula using the 'phage detection using semi-solid agar' methodology detailed below. The chicks were then randomly divided into groups of 15 and inoculated with 1 × 106pfu of the phage cocktail in 1 ml of antacid (30% CaCO3), or given antacid only (control group). In Experiment 2, C. jejuni 2140CD1 was substituted for C. coli A11 and two methods of phage administration were compared: oral gavage and in food. The administration in feed was achieved by withdrawing the normal feed for 3 h and then dosing the chicks with 1 ml of antacid. The group of chicks were then given 45 g of chick crumbs laced with 1.5 × 107pfu phage cocktail in 1.5 ml of SM buffer. After all of the food had been consumed (~1 h) normal feed was re-introduced. Birds were observed during this feeding period to ensure they had all fed. Swabs of faecal samples were collected from each individual bird at intervals after the phage cocktail had been administered and Campylobacter and phages enumerated. The samples were weighed and nine volumes of SM buffer added to produce a 1/10 faecal suspension (minimum of 1.5 ml of SM buffer was added).
A ten-fold dilution series in 10 mM MgSO4 was prepared from each faecal sample collected and 20 μl aliquots of each dilution were spread on half plates of mCCDA agar (Oxoid). The plates were incubated at 42°C in a microaerobic atmosphere for 48 h and characteristic Campylobacter colonies were counted to determine the titre in the original faecal sample.
Phage detection using semi-solid agar
Cultures of C. jejuni 2140CD1 or C. coli A11 were streaked on 5% horse blood agar (Oxoid) and incubated overnight at 42°C in a microaerobic atmosphere. The bacteria were harvested into 1.5 ml of 10 mM MgSO4, and added to 50 ml of molten (55°C) 'top agar': NZCYM broth (BD Biosciences, Oxford, UK) with 0.7% Agar (BD Biosciences).
For screening the pooled faecal samples, a semi-solid overlay method was used: the molten agar and the target Campylobacter strain suspension (approximately 5 ml) was poured onto an NZCYM plate and allowed to set. The pooled faecal samples were treated with 20% (w/v) chloroform, vortexed and then centrifuged at 8600 g for 5 min. Each supernatant was then applied to the over-layered plates in a 20 μl drop. Plates were then incubated at 42°C in a microaerobic atmosphere. For enumeration of phage, a ten-fold dilution series was prepared from each treated sample and a 20 μl aliquot placed in (the centre of) one well of a 6-well tissue culture plate. Three ml of the suspension of Campylobacter and molten agar was then added to each well, gently mixed and then the plates were incubated at 42°C in a microaerobic atmosphere overnight. Plaques in the bacterial lawn were counted after incubation and the phage titre determined.
In vivo acquisition of phage resistance
Swabs of faecal samples were collected from birds colonized with Campylobacter jejuni strain 2140CD1 at 0 dpa and at 7 dpa in Experiment 1. A ten-fold dilution series in 10 mM MgSO4 was prepared from each faecal sample collected and 20 μl aliquots of each dilution were spread on half plates of mCCDA agar (Oxoid). The plates were incubated at 42°C in a microaerobic atmosphere for 48 h and ten characteristic Campylobacter colonies were randomly selected from each faecal sample and their sensitivity to the phage cocktail was tested. Briefly, a drop of the phage cocktail (10 μ) was added to lawns  of each colony pick and the plates incubated overnight at 42°C in microaerobic atmosphere. The appearance of clear zones around the point of application was recorded as the ability to lyse that strain.
Seven groups of 15 birds were inoculated with 0.1 m of PBS containing 1.0 × 106cfu of an overnight culture (42°C in microaerobic atmosphere) of the Campylobacter jejuni strains re-isolated from birds used in the previous trial: two groups received one of each of two separate sensitive Campylobacter strains, three groups received the Campylobacter resistant strains isolated from treated birds and finally two groups received the resistant Campylobacter isolated from birds before phage treatment. The numbers of Campylobacter in faeces from each bird was enumerated at seven days post-inoculation. Swabs of faecal samples were collected from the infected birds and three Campylobacter colonies isolates were selected at random from each faecal sample and checked for their sensitivity to the phage cocktail, as previously described.
Statistical treatment of data
Statistical differences in faecal samples between control and the phage cocktail treatment groups, between the phage cocktail treatment groups themselves and between the sampling points within each group were assessed by using the one-way ANOVA test.
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The authors acknowledge the European Commission under the FP-6-2003-Food-2-A to the project 2005-7224 for the financial support and the Portuguese Foundation for Science and Technology (FCT) through the grant SFRH/BD/23484/2005. The authors are grateful to Victoria Hatch from Massachusetts Institute of Technology for her precious help in the acquisition of the TEM images of phages.
CC and BG designed and planned the experiments, analyzed the data and wrote the manuscript. CC, BG, CH and DH performed the animal trials experiments. CC and SS performed the phage characterization experiments. CC, BG and SS made the statistical analysis of the data. JA and JR supervised and participated in the conception of the study, contributed with materials and reagents and revised the manuscript. All authors read and approved the final manuscript.
Carla M Carvalho, Ben W Gannon contributed equally to this work.