Table 3 Assembly summary from the hybrid method with both Illumina and MinION reads
Isolates | Chromosome size (bp) | Total no. of plasmids | Plasmid size(s) (kb) | CDS | CRISPR | rRNA | tRNA | tmRNA | serotype |
|---|---|---|---|---|---|---|---|---|---|
E1 | 4,910,017 | 5(2*) | 390; 50*; 39; 4; 1* | 5089 | 3 | 22 | 86 | 1 | O2/O50:H6 |
E2 | 5,138,004 | 6(1*) | 124; 103; 83*; 6; 2; 2 | 5286 | 2 | 22 | 97 | 1 | O123/ O186:H40 |
E3 | 4,700,638 | 2 | 109; 2 | 4490 | 2 | 22 | 86 | 1 | O78:H9 |
E4 | 4,922,273 | 4(1*) | 146; 119*; 7; 2 | 4993 | 1 | 22 | 86 | 1 | O7:H4 |
E5 | 4,962,527 | 1 | 133 | 4753 | 2 | 22 | 88 | 1 | O No hit: H4 |
E6 | 4,876,913 | 6(1*) | 192*;182; 41; 7; 5; 5 | 5005 | 2 | 22 | 92 | 1 | O84:H20 |
E7 | 5,176,723 | 2 | 136; 111 | 5106 | 2 | 22 | 87 | 1 | O78:H4 |
E8 | 4,803,012 | 6(1*) | 163; 60; 34; 16*; 4; 1 | 4799 | 1 | 22 | 88 | 1 | O4:H4 |
E9 | 5,118,205 | 3(1*) | 281; 4; 1* | 5123 | 2 | 22 | 93 | 1 | O18/O18ac:H49 |
E10 | 5,084,019 | 2 | 133; 3 | 4949 | 1 | 22 | 93 | 1 | O2/O50:H4 |