Skip to main content

Table 3 Group specificity of the mce genes in terms of the detection of the exclusively absent clusters of genes by pan-genomic analysis

From: Comparative genomic analysis of Mycobacterium intracellulare: implications for clinical taxonomic classification in pulmonary Mycobacterium avium-intracellulare complex disease

Absent from TMI group   
Derived strain (strain group) of hit cluster Possible function Homologous genes in ATCC13950
MOTT64(MP-MIP) virulence factor Mce OCU_RS29085
MOTT64(MP-MIP) mammalian cell entry protein OCU_RS29065
KCTC29084(MP-MIP) mammalian cell entry protein OCU_RS29070
JCM30622(MP-MIP) mammalian cell entry protein OCU_RS29075
JCM30622(MP-MIP) virulence factor Mce family protein OCU_RS29060
1099801.4(M. yongonense) virulence factor Mce OCU_RS29080
Absent from MP-MIP group   
Derived strain (strain group) of hit cluster Possible function Homologous genes in ATCC13950
M023(TMI) mammalian cell entry protein OCU_RS48855
FLAC0162(TMI) Mce family protein Mce1B OCU_RS48875
1099801.4(M. yonogonense) Mce family protein Mce1C OCU_RS48870
05–1390(M. yonogonense) Mce family protein Mce2A OCU_RS28225
05–1390(M. yonogonense) Mce family protein Mce1D OCU_RS48865
Absent from M. yongonense group  
Derived strain (strain group) of hit cluster Possible function Homologous genes in ATCC13950
M021(MP-MIP) mammalian cell entry protein OCU_RS31630
M.i.27(TMI) Mce family protein Mce3B OCU_RS32530
M023(TMI) mammalian cell entry protein OCU_RS32545
M025(TMI) Mce family protein Mce3D OCU_RS31640
M025(TMI) Mce associated membrane protein OCU_RS32555
M026(TMI) mammalian cell entry protein OCU_RS31650
M028(TMI) Mce family protein Mce3D OCU_RS32540
M010(TMI) Mce family protein Mce3C OCU_RS32535
M017(MP-MIP) Mce family protein Mce1D OCU_RS48865
M017(MP-MIP) mammalian cell entry protein OCU_RS48860
M017(MP-MIP) Mce associated protein OCU_RS48840
M012(MP-MIP) mammalian cell entry protein OCU_RS32550
CSURP8077(TMI) Mce family protein Mce1B OCU_RS48875
CSURP8077(TMI) Mce family protein Mce1C OCU_RS48870
CSURP8077(TMI) mammalian cell entry protein OCU_RS48855
2285(TMI) Mce family protein Mce3C OCU_RS31635
1956(TMI) MCE-family protein MCE3A OCU_RS31625
FLAC0181(TMI) Mce associated membrane protein OCU_RS31655