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Fig. 6 | BMC Microbiology

Fig. 6

From: Characterization of the bacterial communities of psyllids associated with Rutaceae in Bhutan by high throughput sequencing

Fig. 6

Phylogenetic analysis of 16S rRNA gene sequences of the ‘Ca. Liberibacter sp.’ amplified from Cornopsylla rotundiconis by PCR (GenBank accession MN203627) and from Co. rotundiconis and the unidentified Cacopsylla sp. by HTS (OTU numbers classified according to Greengenes database, also see Supplementary Table 3). The evolutionary history was inferred by using the maximum likelihood method based on the Kimura 2-parameter model [54]. The tree with the highest log likelihood (− 1039.25) is shown. A discrete Gamma distribution was used to model evolutionary rate differences among sites (5 categories (+G, parameter = 0.1544)). The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The tree is rooted with Agrobacterium tumefaciens

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BMC Microbiology

ISSN: 1471-2180

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