Fig. 9

Phylogenic analysis showing the evolutionary history of the intact prophage (on the left) and incomplete prophage (on the right) that detected in the UPMK_1 genome by PHASTER analysis. The phylogenetic analyses were performed by using the maximum likelihood (ML) method based on the Tamura-Nei model. The tree with the highest log likelihood (− 2,768,365.1605) for intact prophage and (− 1,752,398.3348) for the incomplete prophage are shown. Initial tree(s) for the heuristic search were obtained automatically by applying Neighbor-Join and BioNJ algorithms to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL) approach, and then selecting the topology with superior log likelihood value. All positions containing gaps and missing data were eliminated. The analyses were conducted in MEGA7