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Fig. 10 | BMC Microbiology

Fig. 10

From: Genomic analyses of two novel biofilm-degrading methicillin-resistant Staphylococcus aureus phages

Fig. 10

Molecular phylogenetic analysis of phage integrase gene sequence by Maximum Likelihood method based on the Tamura-Nei model. The tree with the highest log likelihood (− 15,349.6750) is shown. Initial tree(s) for the heuristic search were obtained automatically by applying Neighbor-Join and BioNJ algorithms to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL) approach, and then selecting the topology with superior log likelihood value. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The analysis involved 24 nucleotide sequences. Codon positions included were 1st + 2nd + 3rd + Noncoding. All positions containing gaps and missing data were eliminated. Evolutionary analyses were conducted in MEGA7

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