Category | Protein name | Sequence ID | COG definition |
---|---|---|---|
Chemotaxis and motility | Probable methyl-accepting chemotaxis protein BT9727_0469 | TY90_12985 [C] | COG0840 Methyl-accepting chemotaxis protein |
Chemotaxis protein CheY | TY90_15200 | COG0784 FOG: CheY-like receiver | |
Flagellar motor switch phosphatase FliY | TY90_15195 | COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation | |
Motility protein B | TY90_17335 | COG1360 Flagellar motor protein | |
Methyl-accepting chemotaxis protein tlpC | TY90_17020 | COG0840 Methyl-accepting chemotaxis protein | |
Chemotaxis protein CheA | TY90_17615 | COG0643 Chemotaxis protein histidine kinase and related kinases | |
Methyl-accepting chemotaxis protein mcpA | TY90_06200 | COG0840 Methyl-accepting chemotaxis protein | |
Flagellar motor switch protein FliM | TY90_15190 | COG1868 Flagellar motor switch protein | |
Probable methyl-accepting chemotaxis protein BT9727_0469 | TY90_21790 | COG5278 Predicted periplasmic ligand-binding sensor domain | |
Motility protein A | TY90_17330 | COG1291 Flagellar motor component | |
Swarming motility protein swrAA | TY90_02805 | na | |
Methyl-accepting chemotaxis protein mcpC | TY90_18510 | COG0840 Methyl-accepting chemotaxis protein | |
Swarming motility protein swrB | TY90_17590 | na | |
Methyl-accepting chemotaxis protein mcpA | TY90_06190 | COG0840 Methyl-accepting chemotaxis protein | |
Chemotaxis protein CheV | TY90_18185 | COG0835 Chemotaxis signal transduction protein | |
Methyl-accepting chemotaxis protein mcpB | TY90_00850 | COG0840 Methyl-accepting chemotaxis protein | |
Chemotaxis protein CheW | TY90_17610 | COG0835 Chemotaxis signal transduction protein | |
Chemotaxis protein methyltransferase | TY90_09925 | COG1352 Methylase of chemotaxis methyl-accepting proteins | |
Chemotaxis response regulator protein-glutamate methylesterase | TY90_17620 | COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain | |
Flagellar motor switch protein FliG | TY90_15135 | COG1536 Flagellar motor switch protein | |
Methyl-accepting chemotaxis protein tlpA | TY90_21795 | COG0840 Methyl-accepting chemotaxis protein | |
Swarming motility protein swrAB | TY90_02810 | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | |
Flagellar assembly factor FliW | TY90_02710 | function unknown | |
Flagellar motor switch phosphatase FliY | TY90_15195 | COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation | |
Flagellar biosynthetic protein fliZ | TY90_15205 | COG3190 Flagellar biogenesis protein | |
Flagellar biosynthetic protein fliR | TY90_15220 | COG1684 Flagellar biosynthesis pathway, component FliR | |
Probable flagellar assembly protein fliH | TY90_15140 | COG1317 Flagellar biosynthesis/type III secretory pathway protein | |
Flagellar biosynthetic protein fliP | TY90_15210 | COG1338 Flagellar biosynthesis pathway, component FliP | |
Flagellar protein FliT | TY90_02740 | na | |
Flagellar FliJ protein | TY90_15150 | COG2882 Flagellar biosynthesis chaperone | |
Flagellar protein FliL | TY90_15185 | COG1580 Flagellar basal body-associated protein | |
Flagellar motor switch protein FliG | TY90_15135 | COG1536 Flagellar motor switch protein | |
Flagellar hook-basal body complex protein FliE | TY90_15125 | COG1677 Flagellar hook-basal body protein | |
Flagellar biosynthetic protein FliQ | TY90_15215 | COG1987 Flagellar biosynthesis pathway, component FliQ | |
Flagellar protein fliS | TY90_02735 | COG1516 Flagellin-specific chaperone FliS | |
Plant wall degrading enzymes and plant colonization | Putative aminopeptidase ysdC | TY90_10480 | COG1363 Cellulase M and related proteins |
Putative aminopeptidase yhfE | TY90_04995 | COG1363 Cellulase M and related proteins | |
Putative aminopeptidase ytoP | TY90_07450 | COG1363 Cellulase M and related proteins | |
Endoglucanase | TY90_03065 | COG2730 Endoglucanase | |
Endoglucanase B | TY90_17520 | COG2730 Endoglucanase | |
Reducing end xylose-releasing exo-oligoxylanase | TY90_12415 [C] | COG3405 Endoglucanase Y | |
Beta-glucosidase | TY90_12740 | COG1472 Beta-glucosidase-related glycosidases | |
Trehalose-6-phosphate hydrolase | TY90_06865 | COG0366 Glycosidases | |
Uncharacterized lipoprotein ybbD | TY90_09030 | COG1472 Beta-glucosidase-related glycosidases | |
Oligo-1,6-glucosidase 1 | TY90_14210 | COG0366 Glycosidases | |
Intracellular maltogenic amylase | TY90_14180 | COG0366 Glycosidases | |
Pullulanase | TY90_07415 | COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases | |
Alpha-amylase | TY90_16895 | COG0366 Glycosidases | |
Arabinan endo-1,5-alpha-L-arabinosidase | TY90_10485 | COG3507 Beta-xylosidase | |
Putative beta-xylosidase | TY90_13465 [C] | COG3507 Beta-xylosidase | |
Xylose isomerase | TY90_01590 | COG2115 Xylose isomerase | |
Multiple sugar-binding periplasmic receptor ChvE | TY90_13115 | COG4213 ABC-type xylose transport system, periplasmic component | |
Arabinan endo-1,5-alpha-L-arabinosidase | TY90_15525 | COG3507 Beta-xylosidase | |
Uncharacterized protein yxiA | TY90_08160 | COG3507 Beta-xylosidase | |
Ribose transport system permease protein rbsC | TY90_02405 | COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components | |
Xylose transport system permease protein xylH | TY90_13125 | COG4214 ABC-type xylose transport system, permease component | |
D-xylose-binding periplasmic protein | TY90_09370 | COG4213 ABC-type xylose transport system, periplasmic component | |
Iron nutrition and metabolism | Rhizobactin siderophore biosynthesis protein rhbE | TY90_18465 | COG3486 Lysine/ornithine N-monooxygenase |
Rhizobactin siderophore biosynthesis protein rhbD | TY90_18470 | COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins | |
Probable siderophore transport system permease protein yfiZ | TY90_07875 | COG0609 ABC-type Fe3 + −siderophore transport system, permease component | |
Probable siderophore transport system permease protein yfhA | TY90_07870 | COG0609 ABC-type Fe3 + −siderophore transport system, permease component | |
Rhizobactin siderophore biosynthesis protein rhbC | TY90_18475 | na | |
Rhizobactin siderophore biosynthesis protein rhbF | TY90_18460 | na | |
Probable siderophore-binding lipoprotein yfiY | TY90_07880 | COG0614 ABC-type Fe3 + −hydroxamate transport system, periplasmic component | |
Probable siderophore-binding lipoprotein yfiY | TY90_08825 | COG0614 ABC-type Fe3 + −hydroxamate transport system, periplasmic component | |
Ferrous iron transport protein B | TY90_15330 | COG0370 Fe2+ transport system protein B | |
Iron(3+)-hydroxamate import system permease protein fhuG | TY90_12850 | COG0609 ABC-type Fe3 + −siderophore transport system, permease component | |
Iron-uptake system permease protein feuC | TY90_02125 | COG0609 ABC-type Fe3 + −siderophore transport system, permease component | |
Iron(3+)-hydroxamate-binding protein yxeB | TY90_11500 | COG0614 ABC-type Fe3 + −hydroxamate transport system, periplasmic component | |
Iron(3+)-hydroxamate import ATP-binding protein FhuC | TY90_12855 | COG1120 ABC-type cobalamin/Fe3 + −siderophores transport systems, ATPase components | |
Iron(3+)-hydroxamate-binding protein yxeB | TY90_15350 | COG0614 ABC-type Fe3 + −hydroxamate transport system, periplasmic component | |
Iron(3+)-hydroxamate-binding protein fhuD | TY90_13845 | COG0614 ABC-type Fe3 + −hydroxamate transport system, periplasmic component | |
Iron-uptake system-binding protein | TY90_02115 | COG0614 ABC-type Fe3 + −hydroxamate transport system, periplasmic component | |
Phosphate nutrition and metabolism | Phosphate-binding protein pstS | TY90_12210 | COG0226 ABC-type phosphate transport system, periplasmic component |
Phosphate import ATP-binding protein PstB 1 | TY90_12230 | COG1117 ABC-type phosphate transport system, ATPase component | |
Sulfate permease CysP | TY90_14565 | COG0306 Phosphate/sulphate permeases | |
Probable low-affinity inorganic phosphate transporter | TY90_10295 | COG0306 Phosphate/sulphate permeases | |
Probable ABC transporter permease protein yqgI | TY90_12220 | COG0581 ABC-type phosphate transport system, permease component | |
Phosphate import ATP-binding protein PstB 2 | TY90_12225 | COG1117 ABC-type phosphate transport system, ATPase component | |
Probable ABC transporter permease protein yqgH | TY90_12215 | COG0573 ABC-type phosphate transport system, permease component | |
Uncharacterized protein yqeW | TY90_11930 | COG1283 Na+/phosphate symporter | |
UPF0111 protein ykaA | TY90_10290 | COG1392 Phosphate transport regulator (distant homolog of PhoU) | |
Alkaline phosphatase 3 | TY90_20965 | COG1785 Alkaline phosphatase | |
Probable manganese-dependent inorganic pyrophosphatase | TY90_02230 | COG1227 Inorganic pyrophosphatase/exopolyphosphatase | |
Uncharacterized protein ypjD | TY90_17920 | COG1694 Predicted pyrophosphatase | |
MazG Nucleotide Pyrophosphohydrolase | TY90_20180 | COG1694 Predicted pyrophosphatase | |
Bifunctional oligoribonuclease and PAP phosphatase nrnA | TY90_16540 | COG0618 Exopolyphosphatase-related proteins | |
Uncharacterized protein YhcW | TY90_11780 | COG0637 Predicted phosphatase/phosphohexomutase | |
Putative beta-phosphoglucomutase | TY90_14215 | COG0637 Predicted phosphatase/phosphohexomutase | |
Uncharacterized protein yvdC | TY90_08560 | COG1694 Predicted pyrophosphatase | |
Pyrophosphatase ppaX | TY90_02900 | COG0546 Predicted phosphatases | |
3-phytase | TY90_13145 | na | |
Nitrogen uptake and metabolism | NifU-like protein | TY90_07755 | COG0822 NifU homolog involved in Fe-S cluster formation |
Putative ammonium transporter sll0108 | TY90_15930 [C] | COG0004 Ammonia permease | |
Assimilatory nitrate reductase electron transfer subunit | TY90_04420 | COG1251 NAD(P)H-nitrite reductase | |
Nitrite reductase [NAD(P)H] | TY90_04410 | COG1251 NAD(P)H-nitrite reductase | |
Nitrate transporter | TY90_20435 | COG2223 Nitrate/nitrite transporter | |
Assimilatory nitrite reductase [NAD(P)H] small subunit | TY90_04405 | COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases | |
Uncharacterized transporter ywcJ | TY90_01155 | COG2116 Formate/nitrite family of transporters | |
Uncharacterized transporter yrhG | TY90_11795 | COG2116 Formate/nitrite family of transporters | |
Nitrate reductase beta chain | TY90_03135 | COG1140 Nitrate reductase beta subunit | |
Nitrate reductase gamma chain | TY90_03145 | COG2181 Nitrate reductase gamma subunit | |
Probable nitrate reductase molybdenum cofactor assembly chaperone NarJ | TY90_03140 | COG2180 Nitrate reductase delta subunit | |
Uncharacterized ABC transporter permease protein ytlD | TY90_07125 | COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component | |
Nitrate transporter | TY90_20435 | COG2223 Nitrate/nitrite transporter | |
Putative aliphatic sulfonates transport permease protein ssuC | TY90_11560 | COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component | |
Aliphatic sulfonates import ATP-binding protein SsuB | TY90_11550 | COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component | |
Uncharacterized ABC transporter ATP-binding protein YtlC | TY90_07130 | COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component | |
Putative aliphatic sulfonates-binding protein | TY90_1155 | COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components | |
Antibiotics and secondary metabolites production and transport, biocontrol-related genes | Surfactin synthase thioesterase subunit | TY90_12925 | COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis |
Surfactin synthase subunit 2 | TY90_21750 | COG1020 Non-ribosomal peptide synthetase modules and related proteins | |
Putative phosphoenolpyruvate synthase | TY90_00915 | COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases | |
Surfactin synthase subunit 2 | TY90_21285 | COG1020 Non-ribosomal peptide synthetase modules and related proteins | |
D-alanine--poly(phosphoribitol) ligase subunit 1 | TY90_01430 | COG1020 Non-ribosomal peptide synthetase modules and related proteins | |
Putative phosphoenolpyruvate synthase | TY90_16790 | COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases | |
Surfactin synthase subunit 1 | TY90_17065 | COG1020 Non-ribosomal peptide synthetase modules and related proteins | |
Surfactin synthase subunit 3 | TY90_12920 | COG1020 Non-ribosomal peptide synthetase modules and related proteins | |
Putative phosphoenolpyruvate synthase | TY90_00550 | COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases | |
lantibiotic ABC transporter ATP-binding protein | TY90_19070 | COG1131 ABC-type multidrug transport system, ATPase component | |
lantibiotic ABC transporter ATP-binding protein | TY90_19920 | COG1131 ABC-type multidrug transport system, ATPase component | |
lantibiotic immunity protein | TY90_01250 | na | |
lantibiotic immunity protein | TY90_01260 | na | |
lantibiotic lichenicidin A1 | TY90_01200 | na | |
lantibiotic lichenicidin A2 | TY90_01205 | na | |
lantibiotic-modifying protein | TY90_01195 | na | |
lantibiotic-modifying protein | TY90_01210 | na | |
LanY | TY90_01235 | na | |
bacteriocin biosynthesis protein SagD | TY90_04705 | COG1944 Uncharacterized conserved protein | |
bacteriocin maturation protein | TY90_04710 | na | |
chitinase | TY90_20245 | COG3979 Uncharacterized protein contain chitin-binding domain type 3 | |
chitinase | TY90_20250 | COG3325 Chitinase | |
Spermidine/putrescine transport system permease protein PotC | TY90_17055 | COG1177 ABC-type spermidine/putrescine transport system, permease component II | |
Spermidine/putrescine import ATP-binding protein PotA | TY90_17045 | COG3839 ABC-type sugar transport systems, ATPase components | |
Spermidine/putrescine-binding periplasmic protein 2 | TY90_17040 | COG0687 Spermidine/putrescine-binding periplasmic protein | |
Spermidine synthase | TY90_01960 | COG0421 Spermidine synthase | |
acetoin dehydrogenase | TY90_13415 | COG3284 Transcriptional activator \of acetoin/glycerol metabolism | |
acetoin dehydrogenase | TY90_20060 | na | |
acetoin reductase | TY90_03165 | COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) | |
acetoin utilization protein AcuB | TY90_20055 | COG0517 FOG: CBS domain | |
acetoin:2,2 C6-dichlorophenolindophenol oxidoreductase subunit alpha | TY90_13395 | COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit | |
acetolactate synthase | TY90_02385 | COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] | |
acetolactate synthase | TY90_05725 | COG0440 Acetolactate synthase, small (regulatory) subunit | |
acetolactate synthase catalytic subunit | TY90_05730 | COG0440 Acetolactate synthase, small (regulatory) subunit | |
Oxidative stress response | Catalase X | TY90_01280 | COG0753 Catalase |
Probable manganese catalase | TY90_03405 | COG3546 Mn-containing catalase | |
Glutathione peroxidase homolog BsaA | TY90_00120 | COG0386 Glutathione peroxidase |