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Table 4 RpfG positively regulates the expression of 10 hrp genes, 8 T3S effectors

From: RpfC regulates the expression of the key regulator hrpX of the hrp/T3SS system in Xanthomonas campestris pv. campestris

ID Gene name Predicted product Fold change p value
XC3001 hpa2 Hpa2 protein −0.460 0.014094188
XC3002 hpa1 Hpa1 protein −0.794 1.9328E-05
XC3003 hrcC HrcC protein −0.748 0.000323325
XC3004 hrcT HrpB8 protein −0.819 0.007692677
XC3005 hrpB7 HrpB7 protein −0.898 0.000925861
XC3006 hrcN HrpB6 protein −0.866 0.001395029
XC3007 hrpB5 HrpB5 protein −0.422 0.002457912
XC3008 hrpB4 HrpB4 protein −0.604 0.000177562
XC3009 hrcJ HrcJ protein −1.370 0.000105572
XC3010 hrpB2 HrpB2 protein −1.189 0.000499769
XC3011 hrpB1 HrpB1 protein −2.031 0.000552365
XC3012 hrcU HrcU protein −1.364 1.2705E-05
XC3013 hrcV HrcV protein −1.251 0.000455787
XC3014 hpaP HpaP protein −1.270 0.000271481
XC3015 hrcQ HrcQ protein −1.055 0.002525553
XC3016 hrcR HrcR protein −0.969 0.003879682
XC3017 hrcS HrcS protein −0.999 0.032254632
XC3018 hpaA HpaA protein −0.511 0.000910631
XC3019 hrpD5 HrpD5 protein −1.198 0.000505121
XC3020 hrpD6 HrpD6 protein −1.141 0.000534484
XC3021 hrpE HrpE protein −1.388 0.000719991
XC3022 hpaB HpaB protein −0.589 0.000803494
XC3023 hrpW HrpW protein −0.214 9.24647E-05
XC3024   conserved hypothetical protein −0.621 0.000308403
XC3025 hrpF HrpF protein −2.360 0.000402749
XC3076 hrpX HrpX protein 0.034 4.24498E-05
XC3077 hrpG HrpG protein −0.105 0.000180844
XC0052 avrBs2 avirulence protein 0.037 0.002116633
XC0241 xopXccN conserved hypothetical protein −1.272 0.000227566
XC1553 avrAC Xcc8004 leucin rich protein −0.942 0.000122936
XC2004 avrXccC avirulence protein −1.352 0.00359996
XC2081 avrBs1 avirulence protein −1.786 0.002769123
XC2602 avrXccE1 avirulence protein −1.512 0.000120947
XC2994 xopXccP Type III effector protein −0.970 0.001806466
XC2995 xopXccE1 Type III effector protein −1.246 0.000429812
XC3160 xopXccR1 Type III effector protein −2.452 0.000264107
XC3177 xopXccQ Type III effector protein −2.164 0.001441317
XC3802 avrXccB avirulence protein −0.562 0.002544406
XC4273 xopXccLR leucin rich protein −1.251 0.000444297
XC0486 clp CAP-like protein 0.199 0.000155663
  1. Fold change means the value of log2 ratio of RPKM (ΔrfpG/wild type). The differential expression genes were defined with a stringent cutoff value of |log2-fold change| ≥ 1.0 and p value < 0.01