Table 3 RpfC positively regulates the expression of hrpX, 25 hrp genes, and 9 T3S effectors
ID | Gene name | Predicted product | Fold change | p value |
|---|---|---|---|---|
XC3001 | hpa2 | Hpa2 protein | −1.967 | 0.006410439 |
XC3002 | hpa1 | Hpa1 protein | −3.429 | 5.28933E-05 |
XC3003 | hrcC | HrcC protein | −2.440 | 6.32552E-05 |
XC3004 | hrcT | HrpB8 protein | −2.112 | 0.001062566 |
XC3005 | hrpB7 | HrpB7 protein | −2.429 | 3.27619E-06 |
XC3006 | hrcN | HrpB6 protein | −2.184 | 0.000117024 |
XC3007 | hrpB5 | HrpB5 protein | −3.356 | 1.38714E-05 |
XC3008 | hrpB4 | HrpB4 protein | −2.781 | 0.000112512 |
XC3009 | hrcJ | HrcJ protein | −3.227 | 5.31033E-06 |
XC3010 | hrpB2 | HrpB2 protein | −3.152 | 5.78013E-05 |
XC3011 | hrpB1 | HrpB1 protein | −3.334 | 3.3299E-06 |
XC3012 | hrcU | HrcU protein | −2.873 | 3.59286E-05 |
XC3013 | hrcV | HrcV protein | −2.871 | 7.99441E-05 |
XC3014 | hpaP | HpaP protein | −2.730 | 0.000117653 |
XC3015 | hrcQ | HrcQ protein | −2.963 | 0.000143701 |
XC3016 | hrcR | HrcR protein | −2.208 | 8.2237E-05 |
XC3017 | hrcS | HrcS protein | −2.664 | 0.000432191 |
XC3018 | hpaA | HpaA protein | −2.373 | 1.30182E-05 |
XC3019 | hrpD5 | HrpD5 protein | −2.843 | 2.26091E-05 |
XC3020 | hrpD6 | HrpD6 protein | −2.933 | 2.18335E-06 |
XC3021 | hrpE | HrpE protein | −2.076 | 4.12178E-05 |
XC3022 | hpaB | HpaB protein | −2.121 | 1.32695E-08 |
XC3023 | hrpW | HrpW protein | −1.342 | 3.28466E-06 |
XC3024 |  | conserved hypothetical protein | − 1.376 | 2.43557E-06 |
XC3025 | hrpF | HrpF protein | −2.472 | 3.91605E-06 |
XC3076 | hrpX | HrpX protein | −1.331 | 1.1147E-06 |
XC3077 | hrpG | HrpG protein | −0.564 | 2.03168E-05 |
XC0052 | avrBs2 | avirulence protein | −0.556 | 0.000371266 |
XC0241 | xopXccN | conserved hypothetical protein | −1.713 | 2.02564E-05 |
XC1553 | avrAC Xcc8004 | leucin rich protein | −1.796 | 6.64485E-05 |
XC2004 | avrXccC | avirulence protein | −1.424 | 0.000257062 |
XC2081 | avrBs1 | avirulence protein | −1.357 | 0.00061082 |
XC2602 | avrXccE1 | avirulence protein | −1.458 | 1.49178E-06 |
XC2994 | xopXccP | Type III effector protein | −0.626 | 0.000168654 |
XC2995 | xopXccE1 | Type III effector protein | −1.932 | 2.51053E-06 |
XC3160 | xopXccR1 | Type III effector protein | −2.954 | 1.98578E-05 |
XC3177 | xopXccQ | Type III effector protein | −2.266 | 3.59482E-05 |
XC3802 | avrXccB | avirulence protein | −0.449 | 0.000671213 |
XC4273 | xopXccLR | leucin rich protein | −1.842 | 3.38357E-07 |
XC0486 | clp | CAP-like protein | 0.091 | 0.000208009 |