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Table 2 Primers used in this study

From: Isocitrate dehydrogenase mutation in Vibrio anguillarum results in virulence attenuation and immunoprotection in rainbow trout (Oncorhynchus mykiss)

Primer

Sequence (5′ to 3′, underlined sequences are designed restriction sites)

Description

Reference

pr31

GGTGAGCTCTATTCTTTATTGCCGATTATC

For icd insertional mutant, forward, SacI

This study

pr32

AAATCTAGAGTAAGTCGCTTTAATCGCTTC

For icd insertional mutant, reverse, XbaI

This study

pr50

AAAGAGCTCGTGATCCAGATGTCGATGCTA

For sucA insertional mutant, forward, SacI

This study

pr51

GGTTCTAGAGTTCAGTGTCGATAATGTGCA

For sucA insertional mutant, reverse, XbaI

This study

pr52

AAAGAGCTCGGTCGGATTAGTACAGCGAAG

For sucC insertional mutant, forward, SacI

This study

pr53

GGTTCTAGACTTTTTCAATTTCCACGCCGC

For sucC insertional mutant, reverse, XbaI

This study

pr54

AAAGAGCTCATGTTCGTTGCGGTCGGAATT

For sdhC insertional mutant, forward, SacI

This study

pr55

GGTTCTAGATCCAACTCTTCAAAGTGGCCC

For sdhC insertional mutant, reverse, XbaI

This study

pr56

GGTGAGCTCTCCTTGCACCATATTGATATG

For fumA insertional mutant, forward, SacI

This study

pr57

GGGTCTAGAAGGCTTATCATCGAGAAGAGAG

For fumA insertional mutant, reverse, XbaI

This study

pr29

GGTGAGCTCATGCCAGCGTTAACATTAAAC

For mdh insertional mutant, forward, SacI

This study

pr30

AAATCTAGAGCTGTATGACATCGCACCGGT

For mdh insertional mutant, reverse, XbaI

This study

pr33

AAAGAGCTCGCGGCGTGAGACTAAGGCATC

For cra insertional mutant, forward, SacI

This study

pr34

AAATCTAGACAATGGCAAAGCGCAGAAGTA

For cra insertional mutant, reverse, XbaI

This study

vah1 F RT

GTTTGGTATGGAACACCGCTCAAG

For vah1 qRT-PCR, forward

This study

vah1 R RT

GGCTCAACCTCTCCTTGTAACCAA

For vah1 qRT-PCR, reverse

This study

plp F RT

CAGACGACCACCAGTAACCACTAA

For plp qRT-PCR, forward

[8]

plp R RT

GCAATCATGATGACCCAGCAACAG

For plp qRT-PCR, reverse

[8]

Pm111

GGAAATTATTCCGCCGACGATGGA

For rtxA qRT-PCR, forward

[7]

Pm112

GCCGATACCGTATCGTTACCTGAA

For rtxA qRT-PCR, reverse

[7]