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Table 2 List of species identified in the new and recurrent ulcers by 16S AS

From: One step closer to understanding the role of bacteria in diabetic foot ulcers: characterising the microbiome of ulcers

Species identified No. of samples Gram type Oxygen tolerance
New Recurrent
Actinobaculum massiliense 1 0 Gram Positive Facultative anaerobe
Actinobaculum schaalii 2 2 Gram Positive Facultative anaerobe
Actinomyces europaeus 0 1 Gram Positive Facultative anaerobe
Actinomyces hominis 0 1 Gram Positive Facultative anaerobe
Actinomyces neuii 0 1 Gram Positive Facultative anaerobe
Actinomyces radingae 0 1 Gram Positive Facultative anaerobe
Alcaligenes faecalis 0 1 Gram Negative Aerobe
Anaerococcus murdoch 3 2 Gram Positive Anaerobe
Anaerococcus tetradius 1 0 Gram Positive Anaerobe
Anaerococcus vaginalis 5 4 Gram Positive Anaerobe
Bacteriodes fragilis 2 0 Gram Negative Anaerobe
Bilophila wadsworthia 1 0 Gram Negative Anaerobe
Bulleidia extructa 1 0 Gram Positive Anaerobe
Campylobacter ureolyticus 2 1 Gram Negative Anaerobe
Clostridium saccharogumia 2 0 Gram Positive Anaerobe
Corynebacterium accolens 0 1 Gram Positive Facultative anaerobe
Corynebacterium amycolatum 4 0 Gram Positive Facultative anaerobe
Corynebacterium aurimucosum 2 1 Gram Positive Facultative anaerobe
Corynebacterium freiburgense 0 1 Gram Positive Facultative anaerobe
Corynebacterium hansenii 1 0 Gram Positive Facultative anaerobe
Corynebacterium mycetoide 0 1 Gram Positive Facultative anaerobe
Corynebacterium simulans 1 3 Gram Positive Facultative anaerobe
Corynebacterium tuberculostearicum 1 0 Gram Positive Facultative anaerobe
Corynebacterium xerosis 1 0 Gram Positive Facultative anaerobe
Dermabacter hominis 2 2 Gram Positive Facultative anaerobe
Dialister propionicifaciens 1 0 Gram Negative Anaerobe
Dialister micraerophilus 1 0 Gram Negative Anaerobe
Dialister pneumosintes 1 0 Gram Negative Anaerobe
Eggerthella lenta 1 0 Gram Positive Anaerobe
Enterobacter hormaechei 0 2 Gram Negative Facultative anaerobe
Enterococcus canintestini 0 2 Gram Negative Facultative anaerobe
Escherichia fergusonii 0 1 Gram Negative Facultative anaerobe
Escherichia vulneris 0 1 Gram Negative Facultative anaerobe
Finegoldia magna 5 5 Gram Positive Anaerobe
Fusobacterium canifelinum 1 0 Gram Negative Anaerobe
Fusobacterium nucleatum 1 0 Gram Negative Anaerobe
Fusobacterium periodontium 1 0 Gram Negative Anaerobe
Gemella morbillorum 0 1 Gram Positive Anaerobe
Granulicatella adiacens 0 1 Gram Positive Facultative anaerobe
Haemophilus parainfluenzae 1 1 Gram Negative Facultative anaerobe
Helcococcus kunzii 1 2 Gram Positive Anaerobe
Kocuria atrinae 1   Gram Positive Anaerobe
Leclercia adecarboxylata 0 2 Gram Negative Facultative anaerobe
Mobiluncus curtisii 0 1 Gram Positive Anaerobe
Morganella morganii 0 1 Gram Negative Facultative anaerobe
Moryella indoligenes 0 1 Gram Positive Anaerobe
Negativicoccus succinicivorans 1 1 Gram Negative Anaerobe
Parvimonas micra 1 0 Gram Positive Anaerobe
Peptoniphilus gorbachii 4 4 Gram Positive Anaerobe
Peptoniphilus ivorii 2 3 Gram Positive Anaerobe
Peptoniphilus lacrimalis 2 1 Gram Positive Anaerobe
Peptoniphilus olsenii 2 0 Gram Positive Anaerobe
Peptostreptococcus anaerobius 2 0 Gram Positive Anaerobe
Peptostreptococcus stomatis 1 0 Gram Positive Anaerobe
Porphyromonas asaccharolytica 3 2 Gram Negative Anaerobe
Porphyromonas bennonis 2 1 Gram Negative Anaerobe
Porphyromonas somerae 2 2 Gram Negative Anaerobe
Porphyromonas uenonis 1 1 Gram Negative Anaerobe
Prevotella bergensis 1 1 Gram Negative Anaerobe
Prevotella buccalis 2 0 Gram Negative Anaerobe
Prevotella corporis 1 0 Gram Negative Anaerobe
Prevotella intermedia 1 0 Gram Negative Anaerobe
Prevotella timonensis 1 1 Gram Negative Anaerobe
Proteus myxofaciens 0 1 Gram Negative Anaerobe
Pseudomonas indica 0 1 Gram Negative Aerobe
Pseudomonas otitidis 0 1 Gram Negative Aerobe
Psychrobacter lutiphocae 1 0 Gram Negative Aerobe
Serratia grimesii 0 1 Gram Negative Facultative anaerobe
Staphylococcus carnosus 1 0 Gram Positive Facultative anaerobe
Staphylococcus chromogenes 2 0 Gram Positive Facultative anaerobe
Staphylococcus devriesei 1 0 Gram Positive Facultative anaerobe
Staphylococcus hominis 5 2 Gram Positive Facultative anaerobe
Staphylococcus pettenkoferi 1 0 Gram Positive Facultative anaerobe
Staphylococcus saprophyticus 0 1 Gram Positive Facultative anaerobe
Stenotrophomonas pavanii 0 1 Gram Negative Aerobe
Streptococcus agalactiae 2 0 Gram Positive Facultative anaerobe
Streptococcus anginosus 0 1 Gram Positive Facultative anaerobe
Streptococcus canis 1 0 Gram Positive Facultative anaerobe
Streptococcus dysgalactiae 1 0 Gram Positive Facultative anaerobe
Streptococcus infantarius 1 2 Gram Positive Facultative anaerobe
Varibaculum cambriense 0 1 Gram Positive Anaerobe
Veillonella dispar 1 0 Gram Negative Anaerobe
Veillonella rogosae 1 0 Gram Negative Anaerobe