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Table 2 RIP and genetic diversity indices for Tc1-Mariner elements in the S. sclerotiorum genome

From: Analysis of Tc1-Mariner elements in Sclerotinia sclerotiorum suggests recent activity and flexible transposases

Family

Number of sequences

TpA/ApT*

(CpA + TpG)/(ApC + GpT)*

Nucleotide diversity

Haplotype diversity

Tajimas D test

Mariner-1_SS

15

0.83

1.38

0.073

1.0

−0.46

**p > 0,10

Mariner-2_SS

13

0.82

1.24

0.042

1.0

−1.20664

**p > 0,10

Mariner-3_SS

12

0.74

1.39

0.036

0.98

−1.48909

**p > 0,10

Mariner-4_SS

15

0.76

1.21

0.0048

0.94

−2.16999

P < 0,02

Mariner-5_SS

5

0.81

1.28

0.055

1.0

−0.36338

**p > 0,10

Mariner-6_SS

3

0.83

1.31

-

-

-

Mariner-9_SS

14

0.83

1.28

0.04299

1.0

−0.98378

**p > 0,10

Mariner-10_SS

4

0.78

1.38

0.0566

1.00

−0.40196

**p > 0,10

Mariner-11_SS

3

0.75

1.40

-

-

-

Mariner-12_SS

12

0.76

1.30

0.03949

1.0

−0.99555

**p > 0,10

Mariner-13_SS

5

0.84

1.30

0.05704

1.0

−0.67731

**p > 0,10

TcMar-pogo

4

0.74

1.40

0.0037

1.0

−0.83741

**p > 0,10

  1. *Standard reference values for RIP indices are: TpA/ApT > 0.89 and (CpA + TpG)/(ApC + GpT) < 1.03 [24].
  2. **not significant.