- Research article
- Open Access
Swarming and complex pattern formation in Paenibacillus vortex studied by imaging and tracking cells
© Ingham and Jacob; licensee BioMed Central Ltd. 2008
- Received: 18 September 2007
- Accepted: 25 February 2008
- Published: 25 February 2008
Swarming motility allows microorganisms to move rapidly over surfaces. The Gram-positive bacterium Paenibacillus vortex exhibits advanced cooperative motility on agar plates resulting in intricate colonial patterns with geometries that are highly sensitive to the environment. The cellular mechanisms that underpin the complex multicellular organization of such a simple organism are not well understood.
Swarming by P. vortex was studied by real-time light microscopy, by in situ scanning electron microscopy and by tracking the spread of antibiotic-resistant cells within antibiotic-sensitive colonies. When swarming, P. vortex was found to be peritrichously flagellated. Swarming by the curved cells of P. vortex occurred on an extremely wide range of media and agar concentrations (0.3 to 2.2% w/v). At high agar concentrations (> 1% w/v) rotating colonies formed that could be detached from the main mass of cells by withdrawal of cells into the latter. On lower percentage agars, cells moved in an extended network composed of interconnected "snakes" with short-term collision avoidance and sensitivity to extracts from swarming cells. P. vortex formed single Petri dish-wide "supercolonies" with a colony-wide exchange of motile cells. Swarming cells were coupled by rapidly forming, reversible and non-rigid connections to form a loose raft, apparently connected via flagella. Inhibitors of swarming (p-Nitrophenylglycerol and Congo Red) were identified. Mitomycin C was used to trigger filamentation without inhibiting growth or swarming; this facilitated dissection of the detail of swarming. Mitomycin C treatment resulted in malcoordinated swarming and abortive side branch formation and a strong tendency by a subpopulation of the cells to form minimal rotating aggregates of only a few cells.
P. vortex creates complex macroscopic colonies within which there is considerable reflux and movement and interaction of cells. Cell shape, flagellation, the aversion of cell masses to fuse and temporary connections between proximate cells to form rafts were all features of the swarming and rotation of cell aggregates. Vigorous vortex formation was social, i.e. required > 1 cell. This is the first detailed examination of the swarming behaviour of this bacterium at the cellular level.
- Motile Cell
- Extracellular Material
- Vortex Cell
- Detergent Activity
Bacteria cultured on semi-solid media display colony morphologies which are characteristic of a species, strain and/or particular mode of growth [1–19]. Colony recognition is a major feature of microbiology, with applications in species identification and phenotyping. The structure of cells and the extracellular material within colonies and biofilms is generated by the interplay of many factors including gradients of nutrients and waste products, extracellular polymers and surfactants, cell surface properties, programmed cell death and differentiation, environmental sensing and intercellular signaling [19–41]. In some instances, the resultant masses of cells are striking, with intricate patterns of growth that cover the surface of a Petri dish from a single point of inoculation. Pattern formation is an intriguing form of multicellular organization of the microbial community [42–48]. Microbial pattern formation has been used as a model for complex open systems and as the basis for understanding the organization of cells in eukaryotic tissues and diseases [43, 49, 50].
Bacterial motility is a dispersal mechanism involved in generating macroscopic patterns. For example, the periodic flagella-driven swarming of the Gram-negative bacterium Proteus mirabilis results in concentric rings of alternating swarming and vegetative growth . Myxococcus xanthus, another Gram-negative colonial bacterium but one with gliding motility, generates fruiting bodies in which different cells make unequal contributions; some cells effectively sacrifice themselves for the colony [31, 32, 34]. The microaerophilic bacterium Thiovulum majus can form complex honeycomb patterns on marine surfaces . Gram-positive bacteria, related to Bacillus subtilis, use flagella to swarm to form elaborate and convoluted colonies with chiral and/or fractal geometries. Lubricant polymers and detergents are involved in many of these processes [53, 54]. However, the biological basis of pattern formation, particularly in Gram-positive bacteria, is not well understood.
Not all dispersal in extended bacterial colonies is generated by motility. B. subtilis can form complex multicellular structures without motility, such as macrofibres on 2D surfaces or fruiting bodies . Bacillus mycoides is also able to create asymmetric patterns from growth of extended chains of non-motile but filamentous cells . Non-motile strains of the Enterobacteriaceae can also form fractal patterns . As with motile organisms, surfactants and extracellular polymers are often important in facilitating colony extension [19, 21].
Some Paenibacillus species (Gram-positive, spore-forming aerobes that were previously classified as Bacillus species), can exhibit complex pattern forming behavior. Clinical isolates of P. alvei swarm over agar plates . Paenibacillus spp., such as P. alvei and P. denditiformis, have different repertoires of patterns or morphotypes [4, 5, 8, 9, 16, 39, 45–48, 57]. P. vortex is a motile and colonial Paenibacillus which swarms so effectively on agar that it is difficult to maintain it as an isolated colony. P. vortex is so named because of the vigorous rotation of entire colonies, and of areas within colonies [14, 16, 26]. As for other swarming Gram-positive bacteria, development of social motility in P. vortex is dependent on the properties of the surface being traversed, including the agar concentration and the degree to which it is lubricated by the bacterium [39, 45–48]. Swarming is exceptionally sensitive to the environmental conditions, including nutrients, humidity and stresses such as those imposed by sub-lethal doses of antibiotics . One particular property of P. vortex is that some of the information required to form features of a pattern is apparently retained through successive generations [39, 46–48]. P. vortex is not well developed with respect to genetics or molecular biology.
The recent isolation of P. vortex may offer a significant advantage in studying complex social organization. Many of the multicellular characteristics of bacteria are lost with serial sub-culturing and so can be deficient in the model laboratory strains. For example, biofilm development, fruiting body formation and swarming are all found more robustly in less passaged isolates of B. subtilis  than in the "highly domesticated" strain B. subtilis 168. Also, a Bacillus mycoides type strain was found to have lost the ability to organize into complex patterns and recent work on this phenomenon was necessarily performed on fresh isolates . M. xanthus complex multicellular properties are also selected against by prolonged growth in a homogeneous environment . P. vortex was originally isolated as an outgrowth from a B. subtilis colony. Isolation of pattern-forming bacteria from B. subtilis cultures appears to have occurred several times [4, 6, 57–59].
The fascinating subject of microbial pattern formation remains to be explored in detail by microbiologists. In this work we describe this phenomenon in P. vortex grown mainly on rich agar plates. The complex bacterial dynamics and organization were monitored by in situ electron microscopy; moving cells were imaged in real time by light microscopy and the spread of cells within colonies was mapped by tracking mutants.
Macroscopic pattern formation by P. vortex on gel surfaces
The P. vortex cells in the vortices that develop on plates with high concentrations of agar replicate, and the vortex expands in size and moves outward as a unit, leaving behind a trail of motile but usually non-replicating cells – the vortex branch. The vortices vary in size from tens to thousands of bacteria, according to their location in the colony (Fig. 1B). The dynamics of the vortices is quite complicated and includes attraction, repulsion, merging and splitting of vortices. However, these patterns take a relatively long time to form (days). Additionally, motility on very high concentrations of agar tend not to be sustained with illumination during imaging. Because of these two factors, the study was performed on MH agar at < 0.7% and 1.5% w/v agar (termed low and high percentage agar respectively) upon which motility was vigorous and sustained, which suited the dynamic imaging and tracking approach used.
Inoculation of MH agar plates resulted in the initiation of swarming motility within 5–8 h when incubated at temperatures from 25 to 37°C. Swarming occurred on the surface of agar at concentrations from 0.3 to 2.2% (w/v) but only under aerobic conditions; no growth was observed under anaerobic conditions. At 2.2 to 2.6% (w/v) agar swarming occurred but was erratic, i.e. not always initiating and sometimes stalling without covering the entire plate. The patterns of swarming on 1.5% MH agar showed fractal patterns (Fig. 2A) or and/or dispersed colonies similar to those previously described during growth on Peptone plates [14, 16, 26, 30, 45–48]. At lower agar concentrations swarming was a highly efficient method of dispersal and growth. In liquid culture, aerated with vigorous shaking overnight, 20 ml of MH medium supported 1.3 × 109 cfu/ml. Swarming solely on the surface of 20 ml of MH (0.3% w/v) agar supported up to 7.7 × 108 cfu/ml. Colonial growth, but not swarming, was observed at 42°C irrespective of the agar concentration. Where multiple inoculations were made on the same plate, colonies fused provided the cells were swarming rapidly, > 3 mm/h (data not shown). Such collisions occurred on both high and low percentage agars. However, where swarming was relatively slow (< 3 mm/h) then colonies did not merge, which is as previously described for swarming on peptone-based media [14, 16, 26, 30, 45–48].
At low agar concentrations (< 0.7 %) detachment of aggregates was never observed; all regions of microbial growth were visibly a single network. The arrangement of the spreading colony was fairly evenly spaced masses of > 4 mm across linked by 2–4 connecting strands of < 0.7 mm and spaced every 4–8 mm or a more even network (Fig. 2B). It was possible to culture highly branched, macroscopic colonies over 8 cm across. The patterns formed suggested that whilst motile masses of cells could meet, as indicated by the formation of rings and loops, there was a degree of avoidance of this event. This is implied by the fact that in the later stages of swarming there was a tendency for multiple outgrowths to invade the remaining open areas of agar but not fuse with other cell masses (Figs. 2C and 2D).
Real time imaging of swarming motility
Low percentage agars
Dilution of motile masses (c. 10-fold), using drops of pre-warmed MH medium, resulted in visible motility of > 95% of the cells in the field of view. Subsequently, rafts of cells reformed (within 2–15 min) in which the cells were still motile but were noticeably more aggregated. Observation of cells swimming immediately after greater dilutions suggested that cells in liquid culture swam at speeds up to 10 μm/s, provided there was access to oxygen. The organism appeared positively aerotactic: cells accumulated around air bubbles when motile but rapidly lost motility under a cover slip in the absence of such bubbles. Motility in a liquid environment was only seen with cells diluted from swarm plates and was not observed in MH liquid culture.
High percentage agars
At concentrations of agar above 1% (w/v), aggregates of hundreds to thousands of cells were able to detach from the central mass of cells to form rotating groups (vortices) or were part of the same interconnected pattern (Fig. 2A, Fig. 3A). Movement rates for entire colonies could be in excess of 1 cm/h with a rotation rate of up to once every few seconds. Within the mass of cells distinct whirlpool patterns and streams were observed. The mechanism of detachment of entire sub-colonies in this situation appeared to be primarily withdrawal of cells into the central mass and not simply the colony pulling away. The position of the colony was essentially static during detachment until the connection was broken with the central body. Detachment of a sub-colony was preceded by a mass of cells flowing back into the main colony body (Fig. 3B and 3C).
Effects of extracellular material on motility and pattern formation
Individual cell morphology and flagellation during swarming
High percentage agars
Low percentage agars
Light microscopy of swarming on MH (0.3% w/v) agar lead revealed similar arrangements of flagella and distribution of cell lengths and curvature to that found on higher percentage agars (Fig. 7A).
Tracking of the dispersal of an antibiotic resistant mutant within macroscopic colonies
P. vortex was found to be RIFS (rifampicin sensitive) when tested on MH agar (0.3 to 2% w/v agars) using antibiotic-containing Neo Sensidisks, which produced zones of clearing of c. 12 mm in the bacterial lawn. Spontaneous, RIFR (resistant) colonies of P. vortex were obtained at a frequency of 1.7 × 10-9 when selected on MH plates (1.5% w/v agar) containing 50 μg/ml RIF. This was a similar frequency to the occurrence of spontaneous RIFR in B. subtilis . A RIFR mutant was selected with wild-type growth and swarming characteristics. Macroscopic colonies, from 0.5 to 9 cm in diameter on MH agar (0.3% w/v), of the wild-type strain were seeded with an actively motile RIFR strain (from another swarm plate with the same percentage of agar) at specific locations. After 1–20 h replica plating was used to sample locations within the wild-type colony for the arrival of representatives of the RIFR strain. Control experiments, replica plating RIFS colonies, indicated that colonies without the RIFR strain did not produce RIFR colonies sufficiently often to confound this method of analysis.
Low percentage agars
High percentage agars
On higher percentage agars spread of the RIFR strain was also observed and all inoculation points within a Petri-dish-wide colony allowed access to essentially all other locations within a 4–12 h period. However, after this time migration was less effective than on lower percentage agars and the period in which rapid migration of the RIFR strain within the macrocolony less sustained (Fig. 8F). Additionally, there was a greater bias towards outwards movement: once the colony exceeded 30 mm diameter the RIFR inoculation tended to spread in an arc of c. 220–300 degrees, i.e. in most directions except directly inwards (Fig. 6E). As with migration of the RIFR strain on lower percentage agars, regions to which the RIFR strain did spread were completely colonized. These data suggest that exchange of cells between rotating colonies, even when apparently separated, was relatively commonplace.
Effect of PNPG on swarming motility
Addition of PNPG (p-Nitrophenylglycerol, 0.5 mM) to MH plates (1 to 1.5% w/v agar) delayed the initiation of swarming by 4–8 h. In liquid culture this concentration was not inhibitory to growth (doubling time 27 min without PNPG, 29 min with 0.5 mM in MH broth at 37°C). Higher concentrations were inhibitory growth. PNPG at 0.5 mM is sufficient to inhibit Proteus swarmers as is used as such within clinical microbiology laboratories to limit this organism in diagnostic assays on agar .
Effect of mitomycin C on cell morphology and swarming motility
Mitomycin C (MitC), a DNA damaging agent and a strong trigger for the SOS response [64, 65] was used to create stresses on the swarming cells. When used at concentrations from 0.1 to 0.3 μg/ml MitC did not reduce the growth rate in liquid culture (doubling time 27 min without MitC, 31 min with 0.3 μg/ml in MH broth at 37°C). However, MitC did cause filamentation, as would be expected for any rod-shaped bacteria in which the SOS response is strongly induced [64, 65]. Filamentation was also seen on solid media but, additionally, more curved cell morphologies were found, to the extent that loops could be formed from a single cell.
Low percentage agars
At the microscopic level on low percentage agars it appeared that unproductive or abortive branches were being formed that failed to extend far (< 100 μm) from the parental body in addition to productively elongating "snakes". The structure of colonial development was more modestly affected, with abortive side branch formation being the most common outcome.
High percentage agars
Effect of Congo Red on swarming motility
P. vortex is a fascinating organism, one with social motility that is exquisitely sensitive to its environment. Previously studies have concentrated on the mathematics of pattern formation, analyzing slowly developing colonies over a period of days and controlling the quality of the agar substrate precisely to ensure reproducible macroscopic morphologies . Here we have taken a different approach, one that focuses on imaging and tracking at the cellular level. The choice of rich medium and low percentage agars suited real-time observation. High percentage agars permit the observation of greater structure whilst lower percentages permitted longer term imaging without inhibition of motility, possibly due to a greater resistance to desiccation.
This is the first detailed description of P. vortex swarming at the microscopic level. A picture emerges in which curved cells align into rotating or refluxing masses with what appears to be rapidly reversible physical coupling and coordination. The experiments in which a RIFR strain was seeded into RIFS colonies allowed tracking of the dispersal of cells within colonies. These experiments indicated that P. vortex was able to move within disparate locations with little bias, suggesting that the complex patterns formed are single colonies with the potential for communication and spread of cells, across several centimeters. Light microscopy of swarming P. vortex cells stained for flagella indicated that swarming cells had multiple flagella. SEM imaging detected filaments, consistent with the staining experiments and situations in which motility was observed, and therefore suggesting these were the flagella. The filaments viewed by SEM did not form helical bundles but rather tend to entangle or otherwise associate with those of neighboring cells. In this respect P. vortex resembles the swarming form of Aeromonas  for which lateral, entangling flagella are important in rafting. The loose nature of the connection suggested by the dispersion and reformation kinetics of swarming P. vortex (with dilution and the movement of clumps of bacteria within larger masses) is consistent with this idea. These observations suggest a model for the swarming of P. vortex that involves reversible connections formed by flagella and that a raft of curved cells can convert the rotation of individual flagella into the translocation of the entire colony. The loose nature of the contacts could allow a dual role for flagella in motility and rafting, maintaining the cohesion of the mass but permitting a degree of rearrangement including the characteristic vortex motion. Preliminary results from the genome sequencing of P. vortex suggest there is only one flagellar motility system. It is likely that flagella ids cohesion and drives motility but we cannot exclude the involvement of other mechanisms.
When cellular masses do part on higher percentage agar, it is the main body of cells that withdraws. Cell masses can meet but there is at least a short-term aversion to this event (Fig. 2D, Fig. 3D) that may promote efficient colonization of a surface without complete depletion of nutrients and therefore facilitate sporulation. In the longer term, we note that merging of multiple colonies on high-nutrient media did occur but that during growth on more limited nutrients there is a significant aversion to colonies merging as previously described. It is not clear if physical or sensory (e.g. negative chemotaxis) or other factors govern these interactions. Experiments with cell extracts revealed detergent activity that might be due to a surfactant such as surfactin, which is important in B. subtilis swarming. The dispersal effect (Fig. 4) seen in response to contact with a cell extract is consistent with this possibility. Preliminary genome sequencing data  are also consistent with the possibility of surfactin synthesis.
Within the mass of cells there may be distinct subpopulations. Morphological diversity was certainly commonplace within swarming cultures. Extremely elongated cells were a small but consistent fraction of the swarming population. Elongated cells were not hyperflagellated, and therefore do not resemble the swarmers of Proteus mirabilis, which have an unusually high density of flagella compared to the vegetative form . We also note that under stress (Congo Red, MitC, elevated temperature) even more extreme and diverse morphologies (e.g. cells elongated and curved to the point of being twisted) emerged. The most informative stress was MitC. Preliminary sequencing data  and the visible filamentation suggested that this compound was acting as a trigger of the SOS response [64, 65]. Sublethal doses of MitC resulted in less coordinated swarming, allowing more detailed observation of small cell masses with extreme morphologies. The MitC experiments, along with dilution of untreated motile cells, suggested that motility was a collective phenomenon; it was possible but never rapid in isolated cells. Additionally, a small number of cells (< 10) were sufficient to trigger the rapid rotational "vortex" movement that appears to be at the heart of the P. vortex pattern formation. In this situation, motile cells were usually in contact with non-motile cells and multiple foci of rotation could also be in contact (e.g. Fig. 9). Single cells displayed limited shunting or rotational movement but it was never as rapid as seen in collectives of cells, suggesting a genuinely collective or social behavior.
Two compounds were identified which limited swarming. One, Congo Red, is known to modulate a wide variety of motile behavior in bacteria, including gliding and flagella-mediated swarming . Congo Red has multiple effects on cell surfaces and can interfere with gliding and flagellar motility . Growth of P. vortex with Congo Red led to loss of motility and increased growth within the center of the inoculation and a subpopulation cells with extreme twists. Previous workers have suggested that the formation of a ring structure by B. subtilis is independent of motility . For P. vortex this appears only partially true; a ring colony (on high percentage agars, Fig 10C) certainly does form in the absence of motility. But swarming appears to play a role in evacuating the center of the colony as well as outgrowth from the outer edge of the inoculation. A second inhibitor of P. vortex swarming, PNPG, is also a retardant of Proteus mirabilis swarming and is effective against P. vortex at a similar concentration (0.5 mM). This may imply parallels between these two phylogenetically quite distinct organisms. Both PNPG and Congo Red have a practical utility in facilitating conventional single colony microbiology of P. vortex. Additionally, mutants that overcome these inhibitors are likely to be valuable in understanding the mechanism of swarming.
Finally, there is the question as to the practical applications of pattern formation in bacteria beyond being a model system for processes such as complex cellular organization. One possibility is in the patterning or construction of microscale devices where the structure must be constructed according to flexible rules rather than an exact template . Secondly, P. vortex is exquisitely sensitive to changes in its environment and alters its pattern formation visibly with very subtle environmental changes. This might be an interesting method for monitoring environments that must be kept extremely consistent. Thirdly, we note that complex pattern formation is a property rapidly lost with laboratory culture but is one sometimes found in recently isolated pathogens including Paenibacillus alvei [16, 56]. We speculate that it may therefore be of advantage in infections, as quorum sensing has already been found to be [40, 41]. Antimicrobials targeted against complex social behavior, i.e. quorum sensing, are already in development. Paenibacillus as a model system may allow new targets limiting "antisocial" behavior to be identified.
P. vortex in a bacterium which swarms on nutrient agars to form intricate, extended colonies, within which individual cells have considerable ability to relocate. Cell morphology, vigorous motility (apparently driven by flagella) and interactions between moving masses of cells are important factors in the dynamic architecture of these complex colonies. This work represents an in-depth examination of bacterial cooperative organization from the cell up to the colony level. The results may give important clues about bacterial strategies of cooperative adaptability to environmental stresses. P. vortex provides a valuable model for biocomplexity and the self-organization of biological systems in general.
Liquid culture of P. vortex was in Mueller Hinton (MH, from Oxoid, UK) broth at 37°C with vigorous shaking. Growth in liquid culture was measured as OD595 using a Hitachi U-1500 spectrophotometer. For swarming, MH agar plates (see Results for agar concentrations) were poured with 20 ml of medium and were allowed to solidify whilst covered with sterile filter paper to ensure a consistent thickness and unblemished surface without air bubbles or drying patterns. Congo Red, Mitomycin C and PNPG (all Sigma, NL) were dissolved in distilled water, filter sterilized and added to liquid growth medium, or to MH agar just before pouring, at the appropriate concentrations. Inoculations for swarming were made by depositing a 10 μl drop of an overnight culture grown in MH broth onto the center of a MH agar plate and incubating for 5–60 h at 37°C. Multiple inoculations were made on the same plate to look at the interactions between colonies. Cells were not subcultured indefinitely, every two weeks a new culture was grown from stocks stored at -80°C.
Light microscopy and imaging of motility
Organisms swarming on the surface of nutrient agars were imaged by transmission light microscopy using an Olympus BX41 microscope with a total magnification of 40–500 fold (Olympus, Japan). A heated microscope stage (Marzhauser, Germany) was used to incubate plates during real-time imaging. Image capture was by Kappa CCD camera. Image analysis and the compilation of stacks of still images into movies was with ImageJ software . Addition of compounds to swarming cells was performed manually with a sterile toothpick targeted by low-power microscopy. A Leica DSZ binocular microscope (Leica, NL) with an intrinsic digital camera was used for low magnification (8 to 40 fold) imaging.
Scanning electron microscopy
Organisms actively swarming on the surface of MH agar were rapidly fixed in situ for imaging by scanning electron microscopy (SEM). This was done by excising a 3 × 3 mm area of interest with a razor blade, placing the fragment in an empty Petri dish and surrounding the agar fragment on all sides (except the upper surface) with MH broth containing 3 % (v/v) glutaraldehyde (Fluka, NL). After 2 h fixation, followed by three washes in MH broth, the samples were incubated for 15 min in 1 % (w/v) osmium tetroxide to preserve extracellular polymers. Dehydration with ethanol, critical point drying and imaging were performed as previously described . Additionally, a paraformaldehyde/glutaraldehyde vapour fixation method was used for as a control for fixation artifacts .
Preparation of extracellular material from swarming cells
Inoculations of P. vortex were made onto MH agar (1.5 % w/v) plates as above then: (a) 12 plates with swarms from 6 to 8 cm in diameter were incubated for 14 h, after which all areas of microbial growth (viewed by microscopy) were highly motile and (b) 12 plates were incubated for 60 h, after which the swarm had reached the edges of the Petri dish and motility had completely ceased. Preparations of extracellular material were made from both original sets of Petri dishes by harvesting the cells in 1 ml of MH broth per plate and pooling preparations made under the same condition. Harvested material was centrifuged twice to clear the cells (4500 g); the supernatant was filtered through a 0.22 μm filter and stored at -80°C in individual aliquots. A mock harvesting was made from 12 MH plates without inoculation as a control. Filtered medium from overnight (o/n) liquid cultures was also prepared. The resulting cell-fee supernatants were tested in three ways: (a) 1% (v/v) of the preparation was added to 1.5% (w/v) agar MH plates, then 10 μl of an o/n P. vortex culture was inoculated in the center and the plates were incubated at 37°C; (b) a P. vortex o/n culture was pelleted by centrifugation (4500 g) and resuspended in an identical volume of supernatant, then 10 μl aliquots were inoculated onto 1.5% agar (w/v) MH plates which were incubated at 37°C; (c) detergent activity was determined, as described below.
Detergent activity assays
The detergent activity of extracts was tested using a drop spreading method . Briefly, this was done by spotting 15 μl droplets of water containing 1% (v/v) toluidine blue onto 1 mm thick films of 1 % (w/v) low melting point agarose (Invitrogen, NL) and observing the spreading properties. The agarose contained extracellular material from swarming cells (10% or 50% v/v) or 108 cfu of cells (after washing twice in MH medium), or as controls MH medium or detergents at known concentrations.
Tracking of the dispersal of antibiotic-resistant mutants within colonies
A spontaneous rifampicin resistant mutant of P. vortex was isolated from the parental strain in a similar fashion to mutants selected for in B. subtilis . MH agar (1.5% w/v) containing 50 μg/ml rifampicin (Sigma, NL) was used to select rifampicin-resistant (RIFR) mutants. One such RIFR mutant was selected and used to track the dispersal of this variant through a wild-type colony. Macroscopic colonies of wild-type (RIFS) P. vortex were inoculated with approximately 104 cfu of motile RifR mutant from another MH plate using a sterile toothpick. For each experiment a single inoculation point was chosen for the RIFR strain at different locations and stage of development of the wild-type colony. After 1–20 h further incubation at 37°C the pattern on the plate was replicated using a sterile velvet pad onto fresh MH with and without RIF (50 μg/ml) and cultured for 16 h at 42°C to limit swarming. The pattern of growth on the replica RIF plate was used to assess the degree to which the mutant strain penetrated the network of the wild-type colony.
Staining of flagella was preceded by gentle transfer of swarming cells into drops of water or into warmed MH medium on a microscope slide using a sterile toothpick. Staining was by the tannic acid/crystal violet protocol of Heimbrook and coworkers  with examination of flagella by transmission light microscopy.
Thanks to Tiny Franssen-Verheijen for assistance with SEM imaging. We are grateful to Inna Brainis for technical assistance in providing the strains, to Alexandra Sirota and Tsviya Olender for providing the bioinformatics information and the members of the P. vortex genome sequencing project. This research was supported in part by the Tauber Fund.
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