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Table 2 Primers used for cDNA synthesis, qPCR and Two-Hybrid cloning

From: Trehalose synthesis in Aspergillus niger: characterization of six homologous genes, all with conserved orthologs in related species

Primer name

Sequence 5′-3′

Purpose

T12VN

TTTTTTTTTTTTVN

cDNA synthesis

tpsAF

TGAGGGCTGTTGTGAATGAGC

qPCR tpsA

tpsAR

ACTCGGAAAGCACCAAGACACC

tpsBF

GTGGGCAGAATCAACGGAAAG

qPCR tpsB

tpsBR

TGAACACTTGGATAGTTCGGCAAC

tpsCF

TTGCCGATGCCTGCTTGTTG

qPCR tpsC

tpsCR

TTCGCTGGATGGAAAGTAAGACAC

tppAF

TTGAAGACACCGTTGGGAAGAG

qPCR tppA

tppAR

GGAGCAAAAGATGAACTCAGGAGC

tppBF

TGGACACTTACCTCTGGGATGAAG

qPCR tppB

tppBR

GCTGATGGGCATTGAGTATTTCC

tppCF

AAAGCCAAAGCAGCCGAATC

qPCR tppC

tppCR

TGCCCGTTAGTATCCTCAGCAGAG

actF

TCGTGACCTGACGGATTACCTC

qPCR actin

actR

TGGAAGAAGGAGCAAGAGCAGTG

pKT25F

ACGATTTCGAGGCGGTCAAG

Confirmation of cloned cDNA to pKT25 vector

pKT25R

GATGTGCTGCAAGGCGATTAAG

pUT18CF

TGTCTTCTACGAGAACCGTGCATAC

Confirmation of cloned cDNA to pUT18C vector

pUT18CR

CGGTGAAAACCTCTGACACATGC

tpsAFpst

GACTCTGCAGCCGTTTCCGACAGCATGCCTT

Cloning of tpsA cDNA

tpsAFbam

TATCTGGATCCCGTTTCCGACAGCATGCCTT

tpsARkpn

TGATCGGTACCAGCTCACTGTGCCACCTGCT

tpsBFbam

ATCAGGATCCTCCTTTTCCAATGGCTGCCAA

Cloning of tpsB cDNA

tpsBeco

ATCAGAATTCAGCTGCAGTCATAACATAATCA

tpsCFxba

AGTCTCTAGAATCCAGAATGACGAAGCGCAA

Cloning of tpsC cDNA

tpsCReco

ACTCGAATTCCGTCCATGTCAGGGCTCAA

tppAxbaF

ACTGTCTAGAATCCCCCATCATGCT

Cloning of tppA cDNA

tppAecoR

AGTAGAATTCATTAACAGAACCCTCAATAC

tppBxbaF

TACATCTAGATGTCGCCATGACCATCTACA

Cloning of tppB cDNA

tppBkpnR

TTCCGGTACCCCTTTCACTCCTTATCGTGA

tppCFsal

TATCGTCGACCACCCCAATGACGGTCTTCAT

Cloning of tppC cDNA

tppCRbam

CATAGGATCCTCAGTCATGGCTTTCTCCGT