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Table 1 Genomes used in this study

From: Genomes-based phylogeny of the genus Xanthomonas

(Sub)species Pathovar Strain Abbr. Caused disease Database entry Reference
X. campestris (Pammel 1895) Dowson 1939 emend. Vauterin et al 1995 campestris BCCM/LMG 8004 *(1) Xcc8 Crucifer black rot NCBI GI:66766352 [43]
X. campestris (Pammel 1895) Dowson 1939 emend. Vauterin et al 1995 campestris ATCC 33913T *(2) XccA Cabbage black rot NCBI GI:21166373 [44]
X. campestris (Pammel 1895) Dowson 1939 emend. Vauterin et al 1995 campestris B100 *(3) XccB Brassica black rot NCBI GI:188989396 [45]
X. campestris (Pammel 1895) Dowson 1939 emend. Vauterin et al 1995 armoraciae 756 C *(4) Xca7 Brassica leaf spot JCVI CMR org:Xca Unpublished
X. citri subsp. citri (ex Hasse 1915) Gabriel et al 1989 N/A 306 Xci3 Citrus canker A NCBI GI:21240774 [44]
X. fuscans subsp. aurantifolii Schaad et al 2007 *(5) N/A ICPB 11122 Xfa1 Citrus canker B NCBI GI:292601741 [11]
X. fuscans subsp. aurantifolii Schaad et al 2007 *(5) N/A ICPB10535 *(6) Xfa0 Citrus canker C NCBI GI:292606407 [11]
X. euvesicatoria Jones et al 2006 N/A 85-10 Xeu8 Pepper and tomato bacterial spot NCBI GI:78045556 [46]
X. axonopodis Starr and Garces 1950 emend. Vauterin et al 1995 manihotis CIO 151 *(7) XamC Cassava Bacterial Blight Not in public databases Unpublished
X. vasicola Vauterin et al 1995 vasculorum NCPPB 702 *(8) XvvN Sugarcane gumming disease NCBI GI:257136567 [47]
X. vasicola Vauterin et al 1995 musacearum *(9) NCPPB 4381 *(10) XvmN Banana bacterial wilt NCBI GI:257136682 [47]
X. vasicola Vauterin et al 1995 musacearum *(9) unknown Xvm0 Banana bacterial wilt JCVI CMR org: ntxv01 Unpublished
X. oryzae (ex Ishiyama 1922) Swings et al 1990 emend. van der Mooter and Swings 1990 oryzae KACC 10331*(11) XooK Rice bacterial blight NCBI GI:58579623 [48]
X. oryzae (ex Ishiyama 1922) Swings et al 1990 emend. van der Mooter and Swings 1990 oryzae MAFF 311018 *(12) XooM Rice bacterial blight NCBI GI:84621657 [49]
X. oryzae (ex Ishiyama 1922) Swings et al 1990 emend. van der Mooter and Swings 1990 Oryzae PXO99A *(13) XooP Rice bacterial blight NCBI GI:188574270 [50]
X. oryzae (ex Ishiyama 1922) Swings et al 1990 emend. van der Mooter and Swings 1990 oryzicola BLS 256 XocB Rice bacterial streak NCBI GI:94721236 Unpublished
X. albilineans (Ashby 1929) Dowson 1943 emend. van der Mooter and Swings 1990 N/A GPE PC73 *(14) XalG Sugarcane leaf scald NCBI GI:283472039 [42]
  1. The (Sub)species column contains the accepted name of the bacterium. Alternative names may exist. The listed diseases may be known with different names or in additional hosts. The diseases names and hosts stand as designated in the publication of the genome (rightmost column) or in [8] where unpublished. *(1) Spontaneous rifampicilin-resistant strain derived from NCPPB 1145 (StrainInfo 23435). *(2) Type strain of the species, StrainInfo 23352. *(3) Smr derivative of the wild-type strain DSM 1526 [51], StrainInfo 157307. *(4) Wild-type isolate by Anne Alvarez [52]. *(5) In this study we show that this name should be considered a later heterotypic synonym of X. citri as previously suggested [18, 31]. *(6) IBSF 338, StrainInfo 545646. *(7) CIO, CIAT-ORSTROM (now IRD) Xanthomonas collection, Biotechnology Research Unit, Cali, Colombia [53]. *(8) CFBP 7169 or LMG 8710, StrainInfo 26110. *(10) Isolated from banana by Valentine Aritua, not registered in StrainInfo. *(11) CFBP 7088, StrainInfo 559506. *(12) StrainInfo 373786. *(13) 5-azacytidine-resistant derivative of PXO99, collected by Mew and collaborators [54]. *(14) CFBP 7063, StrainInfo 843129.