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Fig. 3 | BMC Microbiology

Fig. 3

From: Genetic recombination-mediated evolutionary interactions between phages of potential industrial importance and prophages of their hosts within or across the domains of Escherichia, Listeria, Salmonella, Campylobacter, and Staphylococcus

Fig. 3

The SplitTree-generated parallelograms exhibiting conjointly the HGT events between the virulent Staphylococcus phages and S. aureus strains. The HGT events identified between: (a) Staphylococcus phage SA75 (MT013111.1) and some S. aureus strains, when analyzing the phage 27.05 kb chromosomal region containing a large number of genes encoding for terminase small and large subunits (GenBank protein IDs: QIA28729.1 and QIA28730.1 respectively), portal protein (GenBank protein ID: QIA28731.1), minor head protein (GenBank protein ID: QIA28732.1), capsid and scaffold protein (GenBank protein ID: QIA28734.1), major capsid protein (GenBank protein ID: QIA28735.1), tape measure protein (GenBank protein ID: QIA28744.1), putative distal tail protein (GenBank protein ID: QIA28745.1), putative tail associated lysin (GenBank protein ID: QIA28746.1), putative major teichoic acid biosynthesis protein C (GenBank protein ID: QIA28747.1), BppU family baseplate upper protein (GenBank protein ID: QIA28748.1), lysin, N-acetylmuramoyl-L-alanine amidase (GenBank protein ID: QIA28752.1), holin (GenBank protein ID: QIA28755.1), lysin (GenBank protein ID: QIA28756.1) and hypothetical proteins (GenBank protein IDs: QIA28733.1, QIA28736.1-QIA28743.1, QIA28749.1-QIA28751.1, QIA28753.1, QIA28754.1, and QIA28757.1) (Fit: 95.032); (b-c) Staphylococcus phage JD419 (GenBank protein ID: MT899504.1) and various S. aureus strains, when analyzing the phage 10.032 kb chromosomal region containing a large number of genes encoding for lysin, N-acetylmuramoyl-L-alanine amidase (GenBank protein ID: QOI66741.1), holin (GenBank protein ID: QOI66742.1), putative major teichoic acid biosynthesis protein C (GenBank protein ID: QOI66743.1), tail fiber (GenBank protein IDs: QOI66744.1 and QOI66745.1), tail length tape-measure protein (GenBank protein ID: QOI66746.1), and hypothetical proteins (GenBank protein IDs: QOI66719.1-QOI66723.1 ) (Fit: 100). In the splits graphs, the phage names appear according to their designations as presented in the NCBI GenBank database

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BMC Microbiology

ISSN: 1471-2180

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