Fig. 3

Maximum-likelihood phylogeny using core genome alignment of 21 V. parahaemolyticus isolates. Sample ID represents the nomenclature for the strains, Isolation year means the concrete year of isolation, ST describes the sequence types, the presence of the three most common virulence genes in each strain is labeled with red stripe and the blue represents the distribution of resistance genes of the top five antibiotics contained the most predicted resistance genes (peptide, disinfecting agents and antiseptics, tetracycline, aminoglycoside and glycopeptide). The phylogenetic tree was rooted to a reference genome, V. parahaemolyticus RIMD 2210633