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Table 1 Serotype distribution and penicillin and amoxicillin susceptibility among study isolates (n = 390). VTs are marked in bold. Shannon diversity index calculated for the STs found in each serotype

From: High-resolution genomics identifies pneumococcal diversity and persistence of vaccine types in children with community-acquired pneumonia in the UK and Ireland

Serotype

Number of isolates

Shannon Diversity index (Sequence Types)

Penicillin

Amoxicillin

S

I

S

I

R

Total

390

 

329 (84.4%)

61 (15.6%)

380 (97.4%)

5 (1.3%)

5 (1.3%)

15B/C

48 (12.3%)

1.81

47

1

48

  

11A

40 (10.3%)

0.31

37

3

38

 

2

15A

30 (7.7%)

1.45

21

9

29

 

1

23B1

27 (6.9%)

1.36

 

27

27

  

21

25 (6.4%)

0.77

25

 

25

  

35F

23 (5.9%)

0.98

22

1

23

  

35B

21 (5.4%)

1.71

18

3

19

1

1

10A

18 (4.6%)

1.43

18

 

18

  

23A

18 (4.6%)

0.93

18

 

18

  

3

13 (3.3%)

0

13

 

13

  

Non-typeable

13 (3.3%)

1.63

6

7

9

3

1

Serogroup 24

11 (2.8%)

0.30

11

 

11

  

22F

10 (2.6%)

0

10

 

10

  

16F

8 (2.1%)

0.38

7

1

8

  

33F

8 (2.1%)

1.21

8

 

8

  

7C

7 (1.8%)

0

7

 

7

  

17F

7 (1.8%)

1.00

7

 

7

  

19A

7 (1.8%)

1.15

6

1

7

  

9N

6 (1.5%)

0.45

6

 

6

  

12F

6 (1.5%)

0.64

2

4

6

  

23B

6 (1.5%)

0.87

6

 

6

  

8

5 (1.3%)

0

5

 

5

  

19F

5 (1.3%)

1.61

4

1

4

1

 

31

5 (1.3%)

0.50

5

 

5

  

34

5 (1.3%)

1.33

5

 

5

  

38

5 (1.3%)

0

5

 

5

  

6C

4 (1.0%)

0.56

3

1

4

  

13

2 (0.5%)

0.69

1

1

2

  

35D

2 (0.5%)

0.69

2

 

2

  

6B

1 (0.3%)

0

1

 

1

  

10B

1 (0.3%)

0

1

 

1

  

15F

1 (0.3%)

0

 

1

1

  

20

1 (0.3%)

0

1

 

1

  

37

1 (0.3%)

0

1

 

1

 Â