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Fig. 6 | BMC Microbiology

Fig. 6

From: High-resolution genomics identifies pneumococcal diversity and persistence of vaccine types in children with community-acquired pneumonia in the UK and Ireland

Fig. 6

Phylogenetic trees generated from whole genome alignments of serotype 3 (A), serotype 19A (B) and serotype 19F (C) isolates derived from this study (orange shading) and older isolates from the same serotypes. References used were CAPIT119_D1-1, CAPIT226_D1-1 and CAPIT214_D1-1 (marked in red shading), respectively. In red, are shown the large genomic changes predicted to have occurred earlier in evolution, thus being present in a cluster of isolates. In blue, genomic changes predicted only in the branch leaves, that is, in only one isolate. The position of the cps locus in the core genome is indicated with a black rectangle. For serotype 3, the clade to which the isolates belong is also depicted. All serotype 3 isolates belonged to sequence type 180

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BMC Microbiology

ISSN: 1471-2180

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