Fig. 2

(A) Relative abundance of the 10 most abundant species in C. psittaci pneumonia (LungIn)and severe C. psittaci pneumonia(SeverePn). (B) Composition of microbiome in the different samples. (C-D) The abundance of Haemophilus parainfluenzae and Streptococcus pneumoniae in different groups. The boxes represent 25th -75th percentiles, the horizontal lines indicate the median, and the whiskers were drawn from the box to the extremes (values that were lower/greater than first/third quartile minus/plus 1.5 times the interquartile range were regarded as outliers). (E-F) Alpha diversity differences of lung microbiota communities at species level between groups (Shannon index and Simpson index). (G) Principal coordinate analysis plot(PCoA) of samples at the species level. Each dot represents one sample from each group, and the color of the points represents the group in which the sample is located