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Fig. 5 | BMC Microbiology

Fig. 5

From: Structure predictions and functional insights into Amidase_3 domain containing N-acetylmuramyl-L-alanine amidases from Deinococcus indicus DR1

Fig. 5

Structural analysis of Ami1Di and Ami2Di showing zinc binding and active site motifs. (A) Cartoon representation of Ami1Di, colored based on secondary structure (helix, sheet, and loop are shown in red, yellow, and green, respectively). (B) Close-up on the conserved active site motif of Ami1Di. The motifs are represented as sticks, where nitrogen and oxygen are shown in blue and red, respectively. (C) Close-up on the equivalent residue for zinc binding sites of Ami1Di. The zinc and surrounding helix and sheets are shown in green and bright orange, respectively. The chelating residues are represented as sticks (nitrogen and oxygen are shown in blue and red, respectively). (D) Cartoon representation of Ami2Di, colored based on secondary structure (helix, sheet, and loop are shown in red, yellow, and green, respectively). (E) Close-up on the conserved active site motif of Ami2Di. The motifs are represented as sticks, where nitrogen and oxygen are shown in blue and red, respectively. (F) Close-up on the equivalent residue for zinc binding sites of Ami2Di. The zinc and surrounding helix and sheets are shown in green and bright orange, respectively. The chelating residues are represented as sticks (nitrogen and oxygen are shown in blue and red, respectively)

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