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Table 1 The HCV-RT-LAMP-AuNPs-LFB primers used in this study

From: Rapid, visual, label-based biosensor platform for identification of hepatitis C virus in clinical applications

Primer name

Sequence and modifications

Length

Gene

F3

5’-TCGT(A/G)CAGCCTCCAGG(A/C)-3’

17 nt

5’UTR

B3

FIP

5’-GGTCTACGAGACCTCCCG-3’

5’-AAGAAAGGACCC(A/G)GTC(G/A/T)(C/T)CC(C/T)-CATAGT(A/G)GTCTGCGGAACC-3’

18 nt

40 mer

FIP*

5’-FAM-AAGAAAGGACCC(A/G)GTC(G/A/T)(C/T)CC(C/T)-CATAGT(A/G)GTCTGCGGAACC-3’

40 mer

BIP

LF

LF*

LB

5’-CCGC(A/G)AGA(C/T)(C/T)(A/G)CTAGCCGA-GCACCCTATCAGGCAGTACC-3’

5’-C(A/G)ATTCCGGTGTACTCAC-3’

5’-Biotin-C(A/G)ATTCCGGTGTACTCAC-3’

5’-TAG(C/T)GTTGGGT(C/T)GCGAAAG-3’

39 mer

18 nt

18 nt

19 nt

  1. Note FIP*, 5’-labeled with FAM, LF*,5’-labeled with biotin, when used for the AuNPs-LFB assay
  2. Abbreviations FAM, 6-carboxy-fluorescein; nt, nucleotide; mer, monomeric unit