Table 3 The reference DNA sequences used in this study
Genomic sequence analyzed | Accession numbers (GenBank/DDBJ) |
|---|---|
Vibrio cholerae O1 El Tor N16961 | AE003852.1 and AE003853.1 |
CTX prophage | CTX-1, AE003852, coordinates 15666967–1573281 CTX-2, CP001486, coordinates 852233–858550 |
ctxB gene | (AE003852, coordinates 1566967–1567341) |
toxin co-regulated pilus (TCP) genes | (AE003852, coordinates 890449–891123) |
Vibrio pathogenicity island 1 | (VPI-1, AE003852, coordinates 873242–914124) |
Vibrio pathogenicity island 2 | (VPI-2, AE003852, coordinates 1896092- 1952861) |
Vibrio seventh pandemic island I | (VSP-I, AE003852, coordinates 175343–189380) |
Vibrio seventh pandemic island II | (VSP-II, AE003852, coordinates 523156–550021) |
O-AGC | rfb from O1 (LC594800), O2 (LC594901) and O7(LC594961) |