The zoonotic pathogen Wohlfahrtiimonas chitiniclastica – current findings from a clinical and genomic perspective

Kopf, Anna; Bunk, Boyke; Riedel, Thomas; Schröttner, Percy

doi:10.1186/s12866-023-03139-7

Table 2 Overview of all publicly available W. chitiniclastica genomes as of March 2023. In addition to information on the host, isolation source, and location, this table provides an overview of the respective genome size and antibiotic resistance genes detected

From: The zoonotic pathogen Wohlfahrtiimonas chitiniclastica – current findings from a clinical and genomic perspective

Strain	Host	Isolation source	Location	Reference	Genome size (bp)	# CDSs	Antibiotic resistance genes
DSM 100374	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,079,313	1961	macA, macB, tehB
DSM 100375	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,103,638	1932	macA, macB, tehB
DSM 100676	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,139,975	1953	macA, macB, tehB, tet(H), tet(B)
DSM 100917	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,144,768	1955	macA, macB, tehB, tet(H), tet(B)
DSM 105708	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,084,087	1969	macA, macB, tehB, tet(H), tet(B)
DSM 105712	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,133,608	1960	macA, macB, tehB
DSM 105838	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,069,521	1910	macA, macB, tehB
DSM 105839	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,123,437	1966	macA, macB, tehB
DSM 105984	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,120,278	1965	macA, macB, tehB
DSM 106597	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,131,555	1966	macA, macB, tehB
DSM 108045	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,090,370	1950	macA, macB, tehB
DSM 108048	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,074,016	1952	macA, macB, tehB, abaF
DSM 110179	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,119,644	1965	macA, macB, tehB
DSM 110473	Homo sapiens	Wound swap	Dresden, Germany	[8]	2,126,147	1970	macA, macB, tehB
DSM 18708	Wohlfahrtia magnitica	3rd stage larvae of fly	Mezöfalva, Hungary	[1]	1,991,020	1849	macA, macB, tehB
SH04	Chrysomya megacephala	–	Pudong, China	[22]	2,181,980	2132	macA, macB, tehB
BM-Y	Zebra	Pancreas	Shenzhen, China	[28]	2,180,519	2029	macA, macB, tehB, tet(H), tet(D), ant(2″)-Ia, aac(6′)-Ia, ant(3″)-Ib, bla_VEB-1
Strain_20	Chicken	Chicken carcass	Rio de Janeiro, Brazil	[29]	2,123,239	1958	macA, macB, tehB
ATCC 51249	Homo sapiens	Arm	New York, USA	CDC, Atlanta, USA	2,136,105	1973	macA, macB, tehB
F6512	Homo sapiens	Foot	New York, USA	CDC, Atlanta, USA	2,120,698	1968	macA, macB, tehB, tet(H)
F6513	Homo sapiens	Leg	New York, USA	CDC, Atlanta, USA	2,115,422	1975	macA, macB, tehB, tet(H), aph(3″)-Ib, APH [6]-Id. sul2, strA
F6514	Homo sapiens	Oral lesion	New York, USA	CDC, Atlanta, USA	2,112,239	1974	macA, macB, tehB, tet(H), aph(3″)-Ib, APH [6]-Id. sul2, strA
F6515	Homo sapiens	Ankle	New York, USA	CDC, Atlanta, USA	2,134,718	2011	macA, macB, tehB
F6516	Homo sapiens	Arm	New York, USA	CDC, Atlanta, USA	2,071,321	1892	macA, macB, tehB
F9188	Homo sapiens	Leg wound	Indiana, USA	CDC, Atlanta, USA	2,127,263	1987	macA, macB, tehB, tet(B), aph(3′)-Ib, aph(3″)-Ib, APH [6]-Id, sul2, strA
G9145	Homo sapiens	Wound	Colorado, USA	CDC, Atlanta, USA	2,182,988	2017	macA, macB, tehB, tet(B), aph(3′)-Ib, aph(3″)-Ib, sul2, strA, cat3
MUWRP0946	Homo sapiens	Wound swap	Kampala, Uganda	[77]	2,080,419	1942	tet(H), sul2, dfrA1, bla_OXA-1, aph(3″)-Ib, aac(6′)-Ib-cr

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