Table 3 Transcription rates of genes involved in basic metabolisma
Hfx. alexandrinus DSM 27206 ORFb | Gene name | Log2FC | Annotation | ||
|---|---|---|---|---|---|
0.1 mM | 0.25 mM | 0.5 mM | |||
Carbohydrate metabolim | |||||
Hfx-2019-SC1-cds280 | - | - | 2.23 | ABC.SS.P simple sugar transport system permease protein | |
Hfx-2019-SC1-cds281 | - | - | 2.22 | ABC.SS.P simple sugar transport system permease protein | |
Hfx-2019-SC1-cds378 | gatC | 2.51 | - | - | Galactitol-specific IIC component |
Hfx-2019-SC2-cds179 | ppsA | 2.13 | - | - | Pyruvate water dikinase |
Hfx-2019-SC2-cds823 | - | - | 3.49 | COG0701 Predicted permeases | |
Hfx-2019-SC2-cds834 | fbp | 3.74 | - | - | Fructose-1 6-bisphosphatase I |
Hfx-2019-SC3-cds294 | gap2 | 2.53 | - | - | Glyceraldehyde-3-phosphate dehydrogenase (NAD(P)) |
Hfx-2019-SC5-cds125 | galE | 3.83 | - | 3.63 | UDP-glucose 4-epimerase |
Hfx-2019-SC5-cds135 | ich-Y | - | - | 2.2 | Itaconyl-CoA hydratase |
Hfx-2019-SC1-cds496 | ugpB | - | - | -2.01 | sn-glycerol 3-phosphate transport system substrate-binding protein |
Hfx-2019-SC1-cds980 | iolG | -2.32 | - | - | Myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase |
Hfx-2019-SC2-cds552 | - | -2.27 | - | AAA-type ATPase, core component | |
Hfx-2019-SC2-cds877 | gnaD | -2.9 | - | - | Gluconate/galactonate dehydratase |
Hfx-2019-SC3-cds298 | gapA | -2.47 | - | - | Glyceraldehyde 3-phosphate dehydrogenase |
Hfx-2019-SC3-cds336 | gtsA | -3.46 | - | - | Glucose/mannose transport system substrate-binding protein |
Hfx-2019-SC3-cds337 | gtsB | -3.83 | - | - | Glucose/mannose transport system permease protein |
Hfx-2019-SC3-cds338 | gtsC | -3.06 | - | - | Glucose/mannose transport system permease protein |
Hfx-2019-SC3-cds339 | msmX | -3.78 | - | - | Multiple sugar transport system ATP-binding protein |
Hfx-2019-SC3-cds350 | araE | - | - | -2.44 | Arabinose:H+ symporter |
Hfx-2019-SC4-cds36 | iolE | - | - | -6.43 | Sugar phosphate isomerases/epimerases |
Hfx-2019-SC4-cds78 | msmX | - | -2.34 | - | Multiple sugar transport system ATP-binding protein |
Hfx-2019-SC4-cds146 | thuA | - | -2.92 | -4.28 | Trehalose utilization protein |
Hfx-2019-SC4-cds211 | gtsC | - | - | -5.63 | Glucose/mannose transport system permease protein |
Lipid metabolim | |||||
Hfx-2019-SC2-cds258 | acs | 2.2 | - | 2.5 | AMP-forming acetyl-CoA synthetase |
Hfx-2019-SC2-cds631 | acs | 2.39 | - | - | AMP-forming acetyl-CoA synthetase |
Hfx-2019-SC2-cds779 | caiC | 2.01 | - | - | Fatty-acyl-CoA synthase |
Hfx-2019-SC5-cds129 | 2.6 | - | - | Enoyl-CoA hydratase | |
Hfx-2019-SC5-cds130 | paaH | 2.82 | - | 4.02 | 3-hydroxybutyryl-CoA dehydrogenase |
Hfx-2019-SC5-cds131 | pksG | 3.19 | - | 3.59 | hydroxymethylglutaryl-CoA synthase |
Hfx-2019-SC5-cds132 | paaJ | 2.28 | - | 3.15 | Acetyl-CoA C-acetyltransferase |
Hfx-2019-SC5-cds133 | paaK | 3.3 | - | 3.49 | Phenylacetate-CoA ligase |
Hfx-2019-SC5-cds134 | paaI | 2.86 | - | 3.83 | Acyl-CoA thioesterase |
Hfx-2019-SC5-cds136 | epi | 2.14 | - | 2.16 | Methylmalonyl-CoA/ethylmalonyl-CoA epimerase |
Hfx-2019-SC5-cds142 | paaI | 2.75 | - | 2.95 | Acyl-CoA thioesterase |
Hfx-2019-SC5-cds145 | paaD | 2.9 | - | - | Predicted metal-sulfur cluster biosynthetic enzyme |
Hfx-2019-SC5-cds146 | paaC | 3.17 | - | 2.45 | Ring-1,2-phenylacetyl-CoA epoxidase subunitPaaC |
Hfx-2019-SC5-cds147 | paaB | 3.17 | - | 2.44 | Ring-1 2-phenylacetyl-CoA epoxidase subunitPaaB |
Hfx-2019-SC5-cds148 | paaA | 2.69 | - | - | Ring-1 2-phenylacetyl-CoA epoxidase subunit PaaA |
Hfx-2019-SC5-cds76 | prpD | - | -4.03 | - | 2-methylcitrate dehydratase |
Hfx-2019-SC5-cds77 | prpD | - | -3.36 | - | 2-methylcitrate dehydratase |
Amino acid metabolism | |||||
Hfx-2019-SC1-cds368 | puuE | 2.81 | - | 2.17 | 4-aminobutyrate aminotransferase |
Hfx-2019-SC2-cds36 | pdhC | 2.56 | - | - | Pyruvate dehydrogenase E2 component |
Hfx-2019-SC4-cds252 | hyuA | - | - | 2.19 | N-methylhydantoinases |
Hfx-2019-SC5-cds98 | hutH | 2.17 | - | - | Histidine ammonia-lyase |
Hfx-2019-SC5-cds118 | hyuA | - | - | 2.30 | N-methylhydantoinase |
Hfx-2019-SC5-cds119 | hyuB | 2.18 | - | 2.23 | N-methylhydantoinases |
Hfx-2019-SC5-cds120 | pepQ | 3.56 | - | 2.11 | Xaa-Pro dipeptidase |
Hfx-2019-SC5-cds126 | ilvB | 3.59 | - | 4.02 | Acetolactate synthase I/II/III large subunit |
Hfx-2019-SC5-cds151 | 2.1 | - | - | Amidohydrolase | |
Hfx-2019-SC1-cds54 | RP-S6e | -2.72 | - | - | RPS6 small subunit ribosomal protein S6e |
Hfx-2019-SC3-cds359 | livK | - | - | -2.59 | Branched-chain amino acid transport system substrate-binding protein |
Hfx-2019-SC4-cds106 | ilvA | - | -2.53 | -2.05 | Threonine dehydratase |
Hfx-2019-SC4-cds221 | - | -2.08 | - | Aspartate aminotranferase family member | |
Hfx-2019-SC4-cds222 | dat | - | -2.99 | -2.48 | Diaminobutyrate-2-oxoglutarate transaminase |
Hfx-2019-SC5-cds223 | pydC | - | - | -2.05 | Beta-ureidopropionase/ N-carbamoyl-L-amino-acid hydrolase |
Hfx-2019-SC6-cds119 | lysK | -2.16 | - | -2.15 | LysW-gamma-L-lysine/LysW-L-ornithine carboxypeptidase |
Hfx-2019-SC6-cds120 | lysJ | -2.01 | - | - | LysW-gamma-L-lysine/LysW-L-ornithine aminotransferase |
Nucleotide metabolism | |||||
Hfx-2019-SC7-cds82 | draG | - | -2.37 | - | ADP-ribosylglycohydrolase |