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Table 1 Transcription rates of metal transporters and metal-related genesa

From: Genome-wide transcriptional response to silver stress in extremely halophilic archaeon Haloferax alexandrinus DSM 27206 T

Hfx. alexandrinus DSM 27206 ORFb

Gene name

Log2FC

Annotation

0.1 mM

0.25 mM

0.5 mM

Hfx-2019-SC1-cds4

copA

3.25

4.48

5.64

Cu+-exporting ATPase

Hfx-2019-SC1-cds5

lrp

-

2.2

3.73

Transcriptional regulator

Hfx-2019-SC1-cds6

copZ

-

-

3.1

Copper chaperone

Hfx-2019-SC1-cds149

petE

5.49

-

-

Plastocyanin/azurin family

Hfx-2019-SC1-cds430

 

3.14

-

-

HTH_ARSR domain containing protein

Hfx-2019-SC3-cds305

 

-

-

2.09

HTH_ARSR domain containing protein

Hfx-2019-SC4-cds254

 

2.08

-

2.67

ABC.PE.A1 peptide/nickel transport system ATP-binding protein

Hfx-2019-SC4-cds255

 

-

-

2.84

ABC.PE.A peptide/nickel transport system ATP-binding protein

Hfx-2019-SC4-cds257

 

-

-

2.84

ABC.PE.P peptide/nickel transport system permease protein

Hfx-2019-SC4-cds258

ddpA

-

-

2.19

ABC.PE.S peptide/nickel transport system substrate-binding protein

Hfx-2019-SC4-cds326

petE

-

-

3.06

Plastocyanin/azurin family

Hfx-2019-SC5-cds117

mntH

-

-

2.43

Manganese transport protein

Hfx-2019-SC4-cds164

mobA

-

-

-5.72

Molybdopterin-guanine dinucleotide biosynthesis protein A

Hfx-2019-SC4-cds165

wtpA

-

-

-5.94

Molybdate/tungstate transport system substrate-binding protein

Hfx-2019-SC4-cds166

wtpB

-

-

-5.15

Molybdate/tungstate transport system permease protein

Hfx-2019-SC4-cds220

 

-

-2.68

-

LucA/LucC family protein member

Hfx-2019-SC4-cds224

fepB

-2.17

-

-

ABC.FEV.S iron complex transport system substrate-binding protein

Hfx-2019-SC4-cds239

cibT

-2.16

-

-

Cobalt-precorrin-6B (C15)-methyltransferase

Hfx-2019-SC4-cds240

cbtB

-2.9

-

-

Cobalt transporter subunit, putative

Hfx-2019-SC4-cds241

cbtA

-2.83

-

-

Cobalt transporter subunit, putative

Hfx-2019-SC4-cds243

asnC

-2.09

-

-

Lrp/AsnC family transcriptional regulator

Hfx-2019-SC4-cds337

 

-2

-

-

ABC.PE.P1 peptide/nickel transport system permease protein

  1. aRNA-Seq was used to determine the expression levels of the genes in Hfx. alexandrinus DSM 27206, as detailed in the section on Materials and Methods. The data are the average of three replicates. The threshold of differential expression genes was: |log2(FoldChange)|> 1 and qvalue < 0.00. Dashes indicate that there were minimal changes to the transcription, not considered statistically significant. bThe gene name, number, and annotation were generated through the gDNA sequencing of the tested strain, as described in the Materials and Methods section