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Table 1 Significantly differentially regulated genes in only one of the strains in the indicated condition(s)

From: Effect of the res2 transcription factor gene deletion on protein secretion and stress response in the hyperproducer strain Trichoderma reesei Rut-C30

 

Gene ID

Gene name

Putative function

DE in condition

Log2 fold change

Subcellular locilization

Cluster

Genes DE in Rut-C30 and Δres2

TRIREDRAFT_50607

are2

sterol O-acyltransferase

LC/GC

2.33 (Δres2)

ER

4

 

TRIREDRAFT_77547

 

UDP-glucose:sterol glycosyltransferase

LC/GC

LD/GD

-4.38 (Δres2)

-2.58 (Δres2)

cytoplasm

4

 

TRIREDRAFT_109980

 

Putative Acyltransferase CST26

LD/LC

2.01 (Rut-C30)

PM, ER

4

 

TRIREDRAFT_109234

 

Putative D-aminopeptidase

GD/GC

LD/LC

3.63 (Δres2)

2.15 (Δres2)

 

4

 

TRIREDRAFT_67699

 

Putative Amino acid transporter

GD/GC

3.09 (Rut-C30)

 

4

 

TRIREDRAFT_106315

 

Putative Trypsin-like serine proteases domain protein

LD/LC

-2.25 (Rut-C30)

 

2

 

TRIREDRAFT_53961

 

Secreted Aspartic protease PEP2

LC/GC

-2.23 (Δres2)

 

5

 

TRIREDRAFT_120953

 

Putative Glycoside hydrolase family 18

LC/GC

3.25 (Δres2)

 

5

 

TRIREDRAFT_65891

pks2

Polyketide synthase-6

LC/GC

2.06 (Δres2)

 

4

Δres2 unique genes

TRIREDRAFT_45980

 

Putative protein involved in phospholipid translocation

LC/GC

2.11

PM

4

 

TRIREDRAFT_22331

pldB

Putative phospholipase D active site protein

LC/GC

2.90

 

4

 

TRIREDRAFT_120125

 

Putative Lipase/serine esterase

GD/GC

2.34

cytoplasm

4

 

TRIREDRAFT_55627

ept1

Putative Ethanolaminephosphotransferase

GD/GC

2.06

ER, Golgi

4

 

TRIREDRAFT_81972

Section 14

Putative Phosphatidylinositol transfer protein similar to Sect. 14 involved in intracellular transport and UPR

GD/GC

2.06

cytoplasm

4

 

TRIREDRAFT_72788

 

Putative Glycosyltransferase family 31

GD/GC

2.05

ER

4

 

TRIREDRAFT_123718

 

Putative Amino acid transporter

GD/GC

2.29

 

4

 

TRIREDRAFT_77283

 

Putative Glycosyltransferase family 2

GD/GC

LD/LC

2.31

2.53

ER or PM

4

 

TRIREDRAFT_120923

 

Putative Glycosyltransferase family 32

GD/GC

LD/LC

8.43

2.98

ER

3

 

TRIREDRAFT_121486

 

Putative Amino acid transporter

GD/GC

7.74

 

3

 

TRIREDRAFT_21960

ple

Putative Phospholipase E

LC/GC

2.97

PM

6

 

TRIREDRAFT_73248

 

Putative Glycoside hydrolase family 55

LC/GC

-2.17

 

6

 

TRIREDRAFT_121746

 

Putative Glycoside hydrolase family 55

GD/GC

-2.20

 

6

 

TRIREDRAFT_106556

hxt13

hexose transporter

GD/GC

LD/LC

LC/GC

5.08

3.14

6.67

 

4

 

TRIREDRAFT_62747

 

MFS membrane transporter

LC/GC

3.16

 

4

 

TRIREDRAFT_47897

snq2

ABC transporter involved in oxidative stress response

GD/GC

LC/GC

2.08

3.17

 

4

 

TRIREDRAFT_58561

tpo4

MFS permease

LC/GC

-2.14

 

4

 

TRIREDRAFT_46285

hsp30

Heat shock protein 30

LC/GC

3.24

 

4

 

TRIREDRAFT_77770

 

Zinc-binding alcohol dehydrogenase

GD/GC

LC/GC

2.75

2.18

 

4

 

TRIREDRAFT_27948

csg1

G-protein-coupled receptor involved in cellulose sensing CSG1

GD/GC

LC/GC

2.81

2.16

 

4

 

TRIREDRAFT_81049

erg3

Ergosterol 3

LD/LC

-2.06

 

2

 

TRIREDRAFT_36822

 

Putative Glutathione S-transferase

LC/GC

-4.46

 

5

Rut-C30 unique genes

TRIREDRAFT_122992

 

Putative GT31 ß-Glycosyltransferase

LC/GC

3.14

ER

2

 

TRIREDRAFT_105784

 

DUF636 family protein, putative transcription factor

GD/GC

2.80

 

4

 

TRIREDRAFT_66687

 

Putative Glycosyltransferase family 17

GD/GC

2.01

Golgi

4

 

TRIREDRAFT_64925

 

Putative Glycosyltransferase family 32

GD/GC

-2.08

ER

2

 

TRIREDRAFT_120873

 

Putative Glycoside hydrolase family 71

LC/GC

-2.66

 

5

 

TRIREDRAFT_61278

 

High affinity glucose transporter

LD/LC

3.68

 

4

 

TRIREDRAFT_68941

 

Putative Glutathione S-transferase

GD/GC

3.19

 

4

  1. PM Plasma membrane