Table 3 The top 15 different species with up-regulated and down-regulated expression in threes groups
Genus | Species | mean D | mean Fb | mean Fa | log2 fold change (Fa/Fb) | P value |
|---|---|---|---|---|---|---|
g_Bacteroides | s_Bacteroides faecichinchillae | 0.000003 | 0.000063 | 0.000007 | -3.147 | 0.0227 |
s_Bacteroides pyogenes | 0.000003 | 0.000042 | 0.000007 | -2.514 | 0.0277 | |
s_Bacteroides stercorirosoris | 0.000000 | 0.000043 | 0.000006 | -2.880 | 0.0142 | |
g_Odoribacter | s_Odoribacter splanchnicus | 0.000153 | 0.000501 | 0.000090 | -2.479 | 0.0104 |
g_Prevotella | s_Prevotella falsenii | 0.000000 | 0.000000 | 0.000038 | 6.851 | 0.0440 |
g_Bacillus | s_Bacillus sp. UNC41MFS5 | 0.000001 | 0.000002 | 0.000000 | -7.134 | 0.0467 |
s_Bacillus wiedmannii | 0.000005 | 0.000000 | 0.000005 | 5.472 | 0.0490 | |
g_Listeria | s_Listeria monocytogenes | 0.000012 | 0.000001 | 0.000000 | -2.574 | 0.0292 |
g_Brevibacillus | s_Brevibacillus laterosporus | 0.000003 | 0.000000 | 0.000001 | 5.234 | 0.0276 |
g_Paenibacillus | s_Paenibacillus algorifonticola | 0.000001 | 0.000002 | 0.000000 | -2.548 | 0.0172 |
g_Enterococcus | s_Enterococcus hermanniensis | 0.000006 | 0.000000 | 0.000001 | 4.912 | 0.0078 |
g_Lactobacillus | s_Lactobacillus acidophilus | 0.000000 | 0.000000 | 0.000005 | 5.794 | 0.0203 |
s_Lactobacillus coleohominis | 0.000000 | 0.000000 | 0.000024 | 7.771 | 0.0459 | |
s_Lactobacillus gallinarum | 0.000000 | 0.000001 | 0.000038 | 4.981 | 0.0312 | |
s_Lactobacillus plantarum | 0.000000 | 0.000001 | 0.000040 | 4.924 | 0.0413 | |
g_Clostridium | s_Clostridium formicaceticum | 0.000001 | 0.000000 | 0.000008 | 8.241 | 0.0095 |
g_Natronincola | s_Natronincola peptidivorans | 0.000001 | 0.000001 | 0.000000 | -3.231 | 0.0162 |
g_Acetobacterium | s_Acetobacterium bakii | 0.000004 | 0.000000 | 0.000004 | 4.673 | 0.0113 |
g_Blautia | s_[Ruminococcus] gnavus | 0.003542 | 0.002449 | 0.000387 | -2.660 | 0.0025 |
g_Pseudobutyrivibrio | s_Pseudobutyrivibrio sp. UC1225 | 0.000000 | 0.000002 | 0.000000 | -5.699 | 0.0091 |
g_Unclassified | s_Lachnospiraceae bacterium 2_1_58FAA | 0.000085 | 0.000080 | 0.000016 | -2.301 | 0.0309 |
g_Ruminococcus | s_Ruminococcus gnavus CAG:126 | 0.001085 | 0.000640 | 0.000036 | -4.147 | 0.0041 |
g_Unclassified | s_Clostridiales bacterium VE202-13 | 0.000008 | 0.000000 | 0.000007 | 5.853 | 0.0184 |
g_Propionispira | s_Propionispira arboris | 0.000002 | 0.000000 | 0.000006 | 4.696 | 0.0389 |
g_Schwartzia | s_Schwartzia succinivorans | 0.000002 | 0.000000 | 0.000012 | 6.338 | 0.0295 |
g_Selenomonas | s_Selenomonas artemidis | 0.000001 | 0.000000 | 0.000013 | 5.442 | 0.0063 |
s_Selenomonas sp. FC4001 | 0.000006 | 0.000000 | 0.000006 | 6.598 | 0.0195 | |
g_Klebsiella | s_Klebsiella pneumoniae | 0.000442 | 0.000305 | 0.000014 | -4.415 | 0.0037 |
s_Klebsiella sp. 1_1_55 | 0.000026 | 0.000012 | 0.000002 | -2.543 | 0.0246 | |
s_Klebsiella sp. HMSC16C06 | 0.000001 | 0.000001 | 0.000000 | -4.526 | 0.0402 |