Primer name | Gene name | Sequence | Amplicon size (bp) | Annealing Temperature(°C) | Reference |
---|---|---|---|---|---|
Pho A-f | pho | F: 5′- GTGACAAAAGCCACACCATAAATGCCT-3′ | 903 | 56 | [29] |
Pho A-r | R: 3′-TACACTGTCATTACGTTGCGGATTTGGCGT-5′ | ||||
Ecoli-f | Ecoli | F: 5′-TGACGTTACCCGCAGAAGAA-3′ | 832 | 55 | [31] |
Ecoli-r | R: 3′-CTCCAATCCGGACTACGACG-5′ | ||||
mcr-1_mp_f | mcr-1 | F: 5′- AGTCCGTTTGTTCTTGTGGC-3′ | 320 | 58 | [33] |
mcr-1_mp_r | R: 3′- AGATCCTTGGTCTCGGCTTG-5′ | ||||
mcr-2_mp_f | mcr-2 | F: 5′- CAAGTGTGTTGGTCGCAGTT-3′ | 715 | ||
mcr-2_mp_r | R: 3′- TCTAGCCCGACAAGCATACC-5′ | ||||
mcr-3_mp_f | mcr-3 | F: 5′- AAATAAAAATTGTTCCGCTTATG-3′ | 929 | ||
mcr-3_mp_r | R:3′- AATGGAGATCCCCGTTTTT-5′ | ||||
mcr-4_mp_f | mcr-4 | F:5′-TCACTTTCATCACTGCGTTG-3′ | 1116 | ||
mcr-4_mp_r | R:3′-TTGGTCCATGACTACCAATG-5′ | ||||
mcr-5_mp_f | mcr-5 | F:5′-ATGCGGTTGTCTGCATTTATC-3′ | 1644 | ||
mcr-5_mp_r | R:3′-TCATTGTGGTTGTCCTTTTCTG-5′ | ||||
mcr-6_mp_f | mcr-6 | F:5′-AGCTATGTCAATCCCGTGAT-3′ | 252 | 55 | [34] |
mcr-6_mp_r | R:3′-ATTGGCTAGGTTGTCAATC-5′ | ||||
mcr-7_mp_f | mcr-7 | F:5′-GCCCTTCTTTTCGTTGTT-3′ | 551 | ||
mcr-7_mp_r | R:3′-GGTTGGTCTCTTTCTCGT-5′ | ||||
mcr-8_mp_f | mcr-8 | F:5′-TCAACAATTCTACAAAGCGTG-3′ | 856 | ||
mcr-8_mp_r | R:3′-AATGCTGCGCGAATGAAG-5′ | ||||
mcr-9_mp_f | mcr-9 | F:5′-TTCCCTTTGTTCTGGTTG-3′ | 1011 | ||
mcr-9_mp_r | R:3′-GCAGGTAATAAGTCGGTC-5′ | ||||
ChuA. 1b | chu A | F:5′-TGCCATCAACACAGTATATCC-3′ | 288 | 59 | [35] |
ChuA.2 | R:3′-TCAGGTCGCGAGTGACGGC-5′ | ||||
YjaA.1b | yja A | F:5′-ATCACATAGGATTCTGCCG-3′ | 211 | ||
YjaA.2b | R:3′-CAGCGGAGTATAGATGCCA-5′ | ||||
TspE4C2.1b | TspE4.C2 | F:5′-AAGGATTCGCTGTTACCGGAC-3′ | 152 | ||
TspE4C2.2b | R:3′-AACTCCTGATACAGGTGGC-5′ | ||||
AceK.f | arpA | F:5′-TGATATCACGCAGTCAGTAGC-3′ | 400 | ||
ArpA1.r | R:3′-CCGGCCATATTCACATAA-5′ | ||||
trpAgpC.1 | trpAgpC | F:5′-ACAAAAAGTTCTATCGCTTCC-3′ | 219 | 62 | |
trpAgpC.2 | R:3′-CCTGATCCAGATGATGCTC-5′ | ||||
ArpAgpE.f | ArpAgpE | F:5′-ACTATTCTCTGCAGGAAGTC -3′ | 301 | 59 | |
ArpAgpE.r | R:3′-CTTCCGATGTTCTGAACGT-5′ | ||||
trpBA.f | trpBA | F:5′-TCCTGGGACATAATGGTCAG-3′ | 489 | ||
trpBA.r | R:3′-GTGTCAGAACGGAATTGT-5′ |