Table 4 Identification of selected strains based on the 16S rRNA gene sequencing
From: Culture-dependent screening of endospore-forming clostridia in infant feces
Strain | MALDI TOF MS identification | Primers | bp | Identified based on 16S rRNA gene sequence | Similarity | Accession number |
|---|---|---|---|---|---|---|
Clostridiaceae | Â | Â | Â | Â | Â | |
CP_BR1 | C. baratii | fd1 – rp2 | 1.412 |  C. baratii | 99.17% | OP727730 |
CP_BR38 | C. disporicum | fd1 – rp2 | 1.282 |  C. disporicum | 100% | OP727731 |
CP_BR39 | C. disporicum | fd1 – rp2 | 1.283 |  C. disporicum | 100% | OP727732 |
CP_BR6 | C. jeddahense | fd1 – rp2 | 1.294 |  C. jeddahense | 99.61% | OP727733 |
CP_BR45 | C. jeddahense | fd1 – rp2 | 1.364 |  C. jeddahense | 99.55% | OP727734 |
CP_BR7 | C. paraputrificum | fd1 – rp2 | 936 | C. paraputrificum | 98.92% | OP727735 |
CP_BR8 | C. paraputrificum | fd1 – rp2 | 1.284 |  C. paraputrificum | 99.77% | OP727736 |
CP_BR10 | C. perfringens | fd1 – rp2 | 1.396 |  C. perfringens | 99.71% | OP727737 |
CP_BR11 | C. perfringens | fd1 – rp2 | 1.403 |  C. perfringens | 99.86% | OP727738 |
CP_BR15 | C. ramosum | fd1 – rp2 | 1.413 |  C. ramosum | 99.72% | OP727741 |
CP_BR16 | C. ramosum | fd1 – rp2 | 1.372 |  C. ramosum | 100% | OP727742 |
CP_BR12 | C. tertium | fd1 – rp2 | 1.367 |  C. tertium | 99.85% | OP727739 |
CP_BR13 | C. tertium | fd1 – rp2 | 1.238 |  C. tertium | 99.92% | OP727740 |
CP_BR40 | P. bifermentans | fd1 – rp2 | 1.358 | P. benzoelyticum | 99.93% | OP727743 |
Lachnospiraceae | Â | Â | Â | Â | Â | |
CP_BR25 | B. wexlerae | 27f – 1492r | 1.375 | B. wexlerae | 99.64% | OP727744 |
CP_BR26 | B. wexlerae | 27f – 1492r | 1.342 | B. wexlerae | 99.7% | OP727745 |
CP_BR18 | C. symbiosum | fd1 – rp2 | 1.264 |  C. symbiosum | 99.76% | OP727746 |
CP_BR19 | C. symbiosum | fd1 – rp2 | 1.223 |  C. symbiosum | 99.75% | OP727747 |
CP_BR41 | Ei. tayi | fd1 – rp2 | 1.299 | Ei. tayi | 99.38% | OP727748 |
CP_BR42 | R. gnavus | fd1 – rp2 | 1.348 | R. gnavus | 99.85% | OP727749 |
CP_BR43 | R. gnavus | fd1 – rp2 | 1.361 | R. gnavus | 99.93% | OP727750 |
Oscillospiraceae | Â | Â | Â | Â | Â | |
CP_BR35 | F. plautii | fd1 – rp2 | 1.257 |  F. plautii | 99.52% | OP727755 |
CP_BR46 | NRI | fd1 – rp2 | 1.236 |  F. plautii | 99.6% | OP727756 |
CP_BR44 | NRI | fd1 – rp2 | 1.297 | R. bicirculans | 100% | OP727751 |
Peptostreptococcaceae | Â | Â | Â | Â | Â | |
CP_BR21 | Cl. difficile | fd1 – rp2 | 1.362 | Cl. difficile | 99.71% | OP727752 |
CP_BR22 | Cl. difficile | fd1 – rp2 | 1.385 | Cl. difficile | 99.86% | OP727753 |
CP_BR47 | NRI | fd1 – rp2 | 1.219 | E. tenue | 99.18% | OP727760 |
CP_BR48 | NRI | fd1 – rp2 | 1.283 | E. tenue | 99.37% | OP727761 |
CP_BR49 | E. tenue | fd1 – rp2 | 1.321 | E. tenue | 99.54% | OP727759 |
CP_BR36 | NRI | fd1 – rp2 | 1.341 | I. bartlettii | 99.55% | OP727757 |
CP_BR37 | NRI | fd1 – rp2 | 1.366 | I. bartlettii | 99.49% | OP727758 |
CP_BR23 | P. sordellii | fd1 – rp2 | 1.355 | P. sordellii` | 99.63% | OP727754 |