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Table 1 Statistics of data preprocessing representing samples, the fragment length used for library construction, Raw Data size of each sample, clean data obtained after quality check, Clean Q_20 data percentage with an error rate less than 0.01, Clean Q_30 with an error rate less than 0.001. The GC content and ratio of clean data over raw data

From: Unlocking gut microbiota potential of dairy cows in varied environmental conditions using shotgun metagenomic approach

Sample

Insert size

Raw Data (G)

Clean Data (G)

Clean_ Q20%

Clean_Q30 (%)

Clean GC (%)

Effective

Chakwal

350

6.88

6.86

96.53

90.40

42.41

99.723

Patoki

350

6.15

6.14

96.36

89.60

41.33

99.718

Local

350

6.70

6.68

96.53

90.43

43.09

99.787

Salt_Range

350

7.37

7.34

96.50

90.35

43.87

99.612