Fig. 1
From: Diagnosis of Crohn’s disease and ulcerative colitis using the microbiome
Diversity and distribution of microbiomes in healthy control (HC) and IBD (CD and UC) patient groups. A Alpha diversity was calculated as the Chao1 index; (B) Beta diversity was calculated as Bray–Curtis dissimilarity. PCoA was used to display the microbiome space among the groups. C, D, E Comparison of relative taxa abundance among HC, CD, and UC at the phylum (C), genus (D), and species (E) levels. The taxonomic biomarkers were identified using LinDA (FDR < = 0.05, |log2FC|> = 1). F Volcano plot of the composition of the intestinal microbial community at the species level. G Taxon Set Enrichment Analysis (TSEA) results showing the network modules of enriched terms. H Taxon set terms representing the association of human diseases with the known composition of the groups (p < = 0.05)