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Table 3 Analysis of the effect of fatty acid metabolism gene mutations on clustering of lineage 2

From: Association between fatty acid metabolism gene mutations and Mycobacterium tuberculosis transmission revealed by whole genome sequencing

Gene

Position

Type

Reference

Variant

P Value

OR (95% CI)

fadD34

37,305

snp

C

G

0.685

1.68(0.137–20.594)

fadD34

37,334

snp

A

T

0.039

0.172(0.033–0.914)

fadD34

37,971

snp

G

C

0.999

 

fadD34

38,199

snp

C

T

0.849

1.302(0.086–19.663)

gca

136,605

snp

G

C

0.004

22.789(2.669-194.569)

lipC

262,829

snp

C

T

1.000

0.000

clpB

460,413

snp

C

T

1.000

0.000

fgd1

491,556

snp

G

A

0.294

1.682(0.637–4.441)

fgd1

491,742

snp

T

C

0.999

0.000

pepC

893,733

snp

T

G

0.034

0.172(0.034–0.875)

far

951,702

snp

C

T

0.018

0.296(0.108–0.812)

ercc3

958,607

snp

G

A

0.394

1.347(0.68–2.668)

fadH

1,306,259

snp

A

G

0.719

0.643(0.058–7.15)

fadH

1,307,598

snp

C

G

0.999

0.000

ogt

1,477,346

snp

C

G

0.007

3.952(1.453–10.749)

ogt

1,477,522

snp

C

A

0.379

0.309(0.023–4.223)

ogt

1,477,596

snp

C

T

1.000

 

lipI

1,576,481

snp

T

G

0.998

 

lipI

1,576,527

snp

G

T

0.939

1.066(0.206–5.518)

inhA

1,674,210

snp

A

C

0.001

0.296(0.146–0.599)

fadD11

1,754,459

snp

G

A

1.000

 

lgt

1,814,428

snp

G

A

0.999

0.000

rpsA

1,834,177

snp

A

C

0.998

0.000

rpsA

1,834,776

snp

C

T

0.022

3.636(1.204–10.982)

tlyA

1,917,972

snp

A

G

0.999

0.000

lipJ

2,147,022

snp

A

C

0.876

1.139(0.222–5.856)

helZ

2,361,604

snp

C

G

0.999

0.000

helZ

2,362,041

snp

C

A

0.999

 

fadD15

2,449,629

snp

G

A

0.952

1.025(0.458–2.293)

acpS

2,839,689

snp

C

T

0.091

0.754(0.544–1.046)

fas

2,841,022

snp

A

G

0.777

1.468(0.103–20.877)

fas

2,847,281

snp

A

G

0.293

4.527(0.272–75.447)

relA

2,908,252

snp

G

A

0.736

1.181(0.449–3.107)

arsA

3,001,498

snp

C

G

0.003

0.447(0.262–0.764)

arsA

3,001,785

snp

G

A

0.142

0.593(0.295–1.192)

mtr

3,165,636

snp

G

A

0.491

0.57(0.115–2.824)

tesA

3,242,617

snp

C

T

0.800

1.113(0.485–2.556)

cstA

3,428,183

snp

G

A

0.399

0.861(0.608–1.219)

cstA

3,428,917

snp

C

A

0.999

0.000

agpS

3,476,350

snp

G

A

0.921

1.15(0.072–18.234)

nudC

3,571,828

snp

G

C

0.998

0.000

sdhD

3,704,770

snp

A

G

0.135

6.658(0.554–79.965)

lipF

3,906,311

snp

G

A

0.806

1.28(0.179–9.147)

acs

4,108,495

snp

G

A

0.531

1.192(0.688–2.063)

acs

4,109,342

snp

G

A

0.601

0.906(0.626–1.311)

crp

4,116,610

snp

G

A

0.239

2.687(0.518–13.952)

  1. OR, Odds ratio; CI, confidence interval
  2. -means there is no result in statistical software or the result was too large and nonsense
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BMC Microbiology

ISSN: 1471-2180

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