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Table 2 Analysis of the effect of fatty acid metabolism gene mutations on clustering

From: Association between fatty acid metabolism gene mutations and Mycobacterium tuberculosis transmission revealed by whole genome sequencing

Gene

Position

Type

Reference

Variant

P Value

OR (95% CI)

ppiA

12,555

snp

C

T

1.000

 

fadD34

37,305

snp

C

G

0.672

1.733(0.136–22.106)

fadD34

37,334

snp

A

T

0.037

0.168(0.032–0.898)

fadD34

37,553

ins

T

TTCATGACTC

GGCTCGGCCCAC

0.858

1.068(0.52–2.191)

fadD34

37,971

snp

G

C

0.999

 

fadD34

38,199

snp

C

T

0.818

1.379(0.09-21.158)

gca

136,605

snp

G

C

0.005

22.144(2.591-189.272)

lipC

262,829

snp

C

T

1.000

0.000

clpB

460,413

snp

C

T

1.000

0.000

fgd1

491,556

snp

G

A

0.282

1.704(0.646–4.498)

fgd1

491,742

snp

T

C

0.999

0.000

pepC

893,733

snp

T

G

0.029

0.171(0.035–0.831)

pepC

893,895

snp

C

T

1.000

 

far

951,702

snp

C

T

0.019

0.298(0.109–0.818)

fadB

957,117

snp

T

C

1.000

 

ercc3

958,607

snp

G

A

0.407

1.336(0.673–2.654)

ercc3

959,167

snp

C

T

0.999

 

fadH

1,306,259

snp

A

G

0.708

0.631(0.057–7.037)

fadH

1,306,322

snp

C

G

0.805

1.155(0.368–3.618)

fadH

1,306,796

snp

G

A

0.439

1.928(0.366–10.172)

fadH

1,307,598

snp

C

G

0.728

1.967(0.043–89.207)

ogt

1,477,346

snp

C

G

0.008

3.893(1.432–10.583)

ogt

1,477,522

snp

C

A

0.365

0.296(0.021–4.135)

ogt

1,477,596

snp

C

T

1.000

 

lipI

1,576,481

snp

T

G

0.999

 

lipI

1,576,527

snp

G

T

0.899

1.113(0.214–5.774)

tkt

1,630,148

snp

A

C

1.000

 

inhA

1,674,210

snp

A

C

0.001

0.288(0.142–0.584)

fadD11

1,754,459

snp

G

A

1.000

 

lgt

1,814,428

snp

G

A

0.999

0.000

rpsA

1,834,177

snp

A

C

0.999

0.000

rpsA

1,834,776

snp

C

T

0.021

3.674(1.217–11.091)

tlyA

1,917,972

snp

A

G

0.999

0.000

lipJ

2,147,022

snp

A

C

0.732

1.313(0.276–6.256)

helZ

2,361,030

snp

G

A

0.999

0.000

helZ

2,361,311

snp

C

T

1.000

 

helZ

2,361,604

snp

C

G

0.243

0.286(0.035–2.337)

helZ

2,362,041

snp

C

A

0.999

 

fadD15

2,448,458

snp

C

T

0.999

 

fadD15

2,449,629

snp

G

A

0.935

1.034(0.461–2.321)

dlaT

2,482,888

snp

G

A

1.000

 

acpS

2,839,689

snp

C

T

0.067

0.737(0.532–1.021)

fas

2,841,022

snp

A

G

0.929

0.893(0.075–10.667)

fas

2,847,281

snp

A

G

0.286

4.655(0.277–78.322)

relA

2,908,252

snp

G

A

0.797

1.136(0.431–2.994)

arsA

3,001,498

snp

C

G

0.004

0.459(0.269–0.781)

arsA

3,001,785

snp

G

A

0.119

0.574(0.286–1.154)

mtr

3,165,636

snp

G

A

0.501

0.578(0.117–2.852)

tesA

3,242,617

snp

C

T

0.791

1.119(0.486–2.577)

gatB

3,367,765

snp

G

A

1.000

0.000

cstA

3,428,183

snp

G

A

0.390

0.859(0.607–1.216)

cstA

3,428,917

snp

C

A

0.999

0.000

agpS

3,476,350

snp

G

A

0.881

1.236(0.077–19.928)

nudC

3,571,828

snp

G

C

0.999

0.000

sdhD

3,704,686

snp

T

C

0.999

 

sdhD

3,704,770

snp

A

G

0.152

6.16(0.511–74.19)

nagA

3,719,723

snp

A

C

0.576

0.633(0.127–3.145)

lipF

3,906,311

snp

G

A

0.815

1.266(0.176–9.081)

acs

4,108,495

snp

G

A

0.532

1.192(0.687–2.066)

acs

4,109,342

snp

G

A

0.566

0.897(0.62–1.299)

crp

4,116,610

snp

G

A

0.259

2.577(0.499–13.321)

crp

4,116,773

snp

T

C

0.999

0.000

pcnA

4,392,373

snp

G

A

0.964

1.018(0.461–2.248)

  1. OR, Odds ratio; CI, confidence interval
  2. -means there is no result in statistical software or the result was too large and nonsense
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BMC Microbiology

ISSN: 1471-2180

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