Molecular characterization and evolution of the resident population of some alfalfa mosaic virus (AMV) isolates in Egypt

Table 6 Recombination events detected in alfalfa mosaic virus isolates

Recomb	Major parent	Minor parent	% similar	Av. P- value	Breaking^a points	Detection methods^b
Recomb	Major parent	Minor parent	% similar	Av. P- value	Breaking^a points	R	G	B	M	C	S	T
AMV77 (MN548391)	VRU (AF015716)	M3 (HG315522)	92.5%	1.145 × 10^–04- 9.374 × 10^–05	324—396	-	-	+	+	-	+	+
AMV77 (MN548391)	EM99 (MN335926)	Dac 16 AJ130708	99.1%	1.227X10⁻²- 9.536X10⁻⁵	324—396	-	-	+	+	-	+	+
M3 (HG315522)	EM99 (MN335926)	AMV-Mexico (MG813772)	99.2%	7.316 × 10^–06- 1.26 × 10^–02	522—586	-	-	-	+	-	+	+
AMV-Basil (MH625710)	EM99 (MN335926)	AMV77 (MN548391)	93.3%	1.397X10⁻²—5.555X10⁻³	577—471	+	-	+	+	+	+	+
Menoufia (HQ288892)	EM99 (MN335926)	AMV77 (MN548391)	96.6%	1.397X10⁻²—5.555X10⁻³	523—464	+	-	+	+	+	-	-
AMV 425 L (L00162.1)	EM99 (MN335926)	AMV77 (MN548391)	98%	1.397X10⁻²—5.555X10⁻³	518—464	+	-	+	+	+	+	+

^aBegin and end breakpoints positions in the recombinant sequence. ^bRDP (R), GENECONV (G), BOOTSCAN (B), MAXICHI (M), CHIMAERA (C), SISCAN (S) and 3SEQ (T) recombination detection methods, % similar. = % of similarity, AV. P-value = Average of P- value

ISSN: 1471-2180