Fig. 3
From: The role of plasmids in carbapenem resistant E. coli in Alameda County, California
Neighbor-joining tree of 30 CTX-producing E. coli isolates based on a cgMLST EnteroBase scheme including 2513 genes
Legend: The tree was built using cgMLSTFinder v.1.1 and T-Rex webserver and visualized with iTOL v.6.4.3. Different MLST clusters are highlighted in various shades of grey. Isolate pairs with the same cgMLST sequence type are highlighted in pink. The color-coded rings represent the contig type containing the CTX gene as called by mlplasmids and MOB-suite (outer ring) and the CTX gene (inner ring)